Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.
Journal
Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944
Informations de publication
Date de publication:
30 09 2022
30 09 2022
Historique:
received:
03
05
2022
revised:
04
07
2022
accepted:
17
08
2022
pubmed:
19
8
2022
medline:
15
11
2022
entrez:
18
8
2022
Statut:
ppublish
Résumé
Beacon v2 is an API specification established by the Global Alliance for Genomics and Health initiative (GA4GH) that defines a standard for federated discovery of genomic and phenotypic data. Here, we present the Beacon v2 Reference Implementation (B2RI), a set of open-source software tools that allow lighting up a local Beacon instance 'out-of-the-box'. Along with the software, we have created detailed 'Read the Docs' documentation that includes information on deployment and installation. The B2RI is released under GNU General Public License v3.0 and Apache License v2.0. Documentation and source code is available at: https://b2ri-documentation.readthedocs.io. Supplementary data are available at Bioinformatics online.
Identifiants
pubmed: 35980167
pii: 6671215
doi: 10.1093/bioinformatics/btac568
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
4656-4657Subventions
Organisme : Medical Research Council
ID : MC_PC_19024
Pays : United Kingdom
Organisme : ELIXIR
Organisme : ELIXIR Beacon Implementation Studies 2019-2021 and 2022-2023
Informations de copyright
© The Author(s) 2022. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.