The respiratory microbiota alpha-diversity in chronic lung diseases: first systematic review and meta-analysis.

Alpha-diversity Asthma Chronic obstructive respiratory disease Chronic respiratory diseases Cystic fibrosis Factor Analysis of Mixed Data Human lung bacteriome Human lung microbiome Meta-analysis Non-cystic fibrosis bronchiectasis Random-effects models

Journal

Respiratory research
ISSN: 1465-993X
Titre abrégé: Respir Res
Pays: England
ID NLM: 101090633

Informations de publication

Date de publication:
23 Aug 2022
Historique:
received: 31 03 2022
accepted: 17 07 2022
entrez: 23 8 2022
pubmed: 24 8 2022
medline: 26 8 2022
Statut: epublish

Résumé

While there seems to be a consensus that a decrease in gut microbiome diversity is related to a decline in health status, the associations between respiratory microbiome diversity and chronic lung disease remain a matter of debate. We provide a systematic review and meta-analysis of studies examining lung microbiota alpha-diversity in patients with asthma, chronic obstructive pulmonary disease (COPD), cystic fibrosis (CF) or bronchiectasis (NCFB), in which a control group based on disease status or healthy subjects is provided for comparison. We reviewed 351 articles on title and abstract, of which 27 met our inclusion criteria for systematic review. Data from 24 of these studies were used in the meta-analysis. We observed a trend that CF patients have a less diverse respiratory microbiota than healthy individuals. However, substantial heterogeneity was present and detailed using random-effects models, which limits the comparison between studies. Knowledge on respiratory microbiota is under construction, and for the moment, it seems that alpha-diversity measurements are not enough documented to fully understand the link between microbiota and health, excepted in CF context which represents the most studied chronic respiratory disease with consistent published data to link alpha-diversity and lung function. Whether differences in respiratory microbiota profiles have an impact on chronic respiratory disease symptoms and/or evolution deserves further exploration.

Sections du résumé

BACKGROUND BACKGROUND
While there seems to be a consensus that a decrease in gut microbiome diversity is related to a decline in health status, the associations between respiratory microbiome diversity and chronic lung disease remain a matter of debate. We provide a systematic review and meta-analysis of studies examining lung microbiota alpha-diversity in patients with asthma, chronic obstructive pulmonary disease (COPD), cystic fibrosis (CF) or bronchiectasis (NCFB), in which a control group based on disease status or healthy subjects is provided for comparison.
RESULTS RESULTS
We reviewed 351 articles on title and abstract, of which 27 met our inclusion criteria for systematic review. Data from 24 of these studies were used in the meta-analysis. We observed a trend that CF patients have a less diverse respiratory microbiota than healthy individuals. However, substantial heterogeneity was present and detailed using random-effects models, which limits the comparison between studies.
CONCLUSIONS CONCLUSIONS
Knowledge on respiratory microbiota is under construction, and for the moment, it seems that alpha-diversity measurements are not enough documented to fully understand the link between microbiota and health, excepted in CF context which represents the most studied chronic respiratory disease with consistent published data to link alpha-diversity and lung function. Whether differences in respiratory microbiota profiles have an impact on chronic respiratory disease symptoms and/or evolution deserves further exploration.

Identifiants

pubmed: 35999634
doi: 10.1186/s12931-022-02132-4
pii: 10.1186/s12931-022-02132-4
pmc: PMC9396807
doi:

Types de publication

Journal Article Meta-Analysis Systematic Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

214

Informations de copyright

© 2022. The Author(s).

Références

Gut Microbes. 2016 Nov;7(6):455-458
pubmed: 27723427
Sci Rep. 2020 Feb 27;10(1):3589
pubmed: 32108159
Am J Respir Crit Care Med. 2014 Jun 1;189(11):1309-15
pubmed: 24702670
Tuberc Respir Dis (Seoul). 2016 Jul;79(3):165-78
pubmed: 27433177
Biometrics. 2019 Mar;75(1):337-346
pubmed: 30289163
Genet Epidemiol. 2005 Feb;28(2):123-37
pubmed: 15593093
Thorax. 2016 Sep;71(9):795-803
pubmed: 27146202
Respir Med. 2017 Oct;131:192-198
pubmed: 28947029
Int J Mol Sci. 2021 Oct 08;22(19):
pubmed: 34639212
J Clin Invest. 2021 Aug 2;131(15):
pubmed: 34338230
Laryngoscope. 2019 Mar;129(3):544-550
pubmed: 30284279
Sci Rep. 2015 May 14;5:10241
pubmed: 25974282
Gut. 2017 Jun;66(6):1039-1048
pubmed: 26843508
PLoS One. 2011 Feb 22;6(2):e16384
pubmed: 21364979
Front Physiol. 2018 Aug 21;9:1168
pubmed: 30246806
PLoS One. 2015 Dec 03;10(12):e0144448
pubmed: 26632844
Lancet Respir Med. 2020 Jun;8(6):585-596
pubmed: 32526187
Front Cell Infect Microbiol. 2021 Dec 06;11:763121
pubmed: 34938669
J Allergy Clin Immunol Pract. 2015 Jul-Aug;3(4):489-95; quiz 496-7
pubmed: 26164572
J Allergy Clin Immunol. 2013 Feb;131(2):346-52.e1-3
pubmed: 23265859
J Allergy Clin Immunol. 2021 Jan;147(1):123-134
pubmed: 32353491
Microbiome. 2017 Feb 10;5(1):20
pubmed: 28187782
Gut. 2019 Jun;68(6):1014-1023
pubmed: 30045880
Genome Biol. 2019 Jul 31;20(1):150
pubmed: 31366367
J Allergy Clin Immunol. 2017 Aug;140(2):407-417.e11
pubmed: 28042058
Exp Mol Med. 2017 Apr 14;49(4):e316
pubmed: 28408748
Stat Methods Med Res. 2020 Jan 30;:962280219889080
pubmed: 32292115
J Microbiol Biotechnol. 2017 Dec 28;27(12):2089-2093
pubmed: 29032640
Am J Respir Crit Care Med. 2013 Nov 15;188(10):1193-201
pubmed: 24024497
Clin Transl Allergy. 2020 Oct 22;10:42
pubmed: 33110490
PLoS One. 2009 Oct 09;4(10):e7370
pubmed: 19816605
Ann Intern Med. 2015 Oct 6;163(7):566-7
pubmed: 26436629
J Allergy Clin Immunol. 2016 May;137(5):1398-1405.e3
pubmed: 26627545
Nat Rev Microbiol. 2018 Feb;16(2):111-120
pubmed: 29062070
Nat Rev Microbiol. 2017 May;15(5):259-270
pubmed: 28316330
Allergy. 2019 Apr;74(4):709-719
pubmed: 30242844
PLoS One. 2017 Aug 22;12(8):e0183553
pubmed: 28829833
PLoS One. 2016 Jul 08;11(7):e0158622
pubmed: 27391160
Nat Med. 2021 Apr;27(4):688-699
pubmed: 33820995
Eur Respir J. 2018 Jul 27;52(1):
pubmed: 29880655
J Allergy Clin Immunol. 2021 Jan;147(1):158-167
pubmed: 32353489
Lancet Respir Med. 2014 Dec;2(12):988-96
pubmed: 25458200
Gut. 2021 Jun;70(6):1174-1182
pubmed: 33272977
Ann Intern Med. 2015 Jun 2;162(11):777-84
pubmed: 26030634
PLoS One. 2012;7(10):e47305
pubmed: 23071781
J Bacteriol. 2012 Sep;194(17):4709-17
pubmed: 22753064
JAMA. 2000 Apr 19;283(15):2008-12
pubmed: 10789670
Microbiome. 2017 Jun 30;5(1):67
pubmed: 28666467
Microbiome. 2020 Apr 2;8(1):45
pubmed: 32238195
PLoS One. 2019 Sep 17;14(9):e0222449
pubmed: 31527888
J Allergy Clin Immunol. 2021 Apr;147(4):1296-1305.e6
pubmed: 32926879
PLoS One. 2014 Oct 16;9(10):e109710
pubmed: 25329665
Front Microbiol. 2020 Jul 30;11:1758
pubmed: 32849386
Ann Am Thorac Soc. 2015 Nov;12 Suppl 2:S176-80
pubmed: 26595736
Sci Rep. 2019 Sep 9;9(1):12918
pubmed: 31501492
Front Microbiol. 2020 Jul 21;11:1647
pubmed: 32849339
PLoS One. 2022 Feb 24;17(2):e0264443
pubmed: 35202411
Ann Am Thorac Soc. 2013 Jun;10(3):179-87
pubmed: 23802813
BMJ. 2003 Sep 6;327(7414):557-60
pubmed: 12958120

Auteurs

Marta Avalos-Fernandez (M)

University of Bordeaux, Bordeaux Population Health Research Center, UMR U1219, INSERM, F-33000, Bordeaux, France. marta.avalos-fernandez@u-bordeaux.fr.
SISTM team Inria BSO, F-33405, Talence, France. marta.avalos-fernandez@u-bordeaux.fr.

Thibaud Alin (T)

University of Bordeaux, Bordeaux Population Health Research Center, UMR U1219, INSERM, F-33000, Bordeaux, France.
SISTM team Inria BSO, F-33405, Talence, France.

Clémence Métayer (C)

University of Bordeaux, Bordeaux Population Health Research Center, UMR U1219, INSERM, F-33000, Bordeaux, France.
SISTM team Inria BSO, F-33405, Talence, France.

Rodolphe Thiébaut (R)

University of Bordeaux, Bordeaux Population Health Research Center, UMR U1219, INSERM, F-33000, Bordeaux, France.
SISTM team Inria BSO, F-33405, Talence, France.
Pole of Public Health, University Hospital of Bordeaux, F-33000, Bordeaux, France.

Raphaël Enaud (R)

Cystic fibrosis centre (CRCM), Paediatrics Department, University Hospital of Bordeaux, F-33000, Bordeaux, France.
Parasitology-Mycology Department, University Hospital of Bordeaux, F-33000, Bordeaux, France.

Laurence Delhaes (L)

Cystic fibrosis centre (CRCM), Paediatrics Department, University Hospital of Bordeaux, F-33000, Bordeaux, France.
Parasitology-Mycology Department, University Hospital of Bordeaux, F-33000, Bordeaux, France.
University of Bordeaux, Bordeaux Cardio-Thoracic Research Center, U1045, INSERM, F-33000, Bordeaux, France.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH