SurvMaximin: Robust federated approach to transporting survival risk prediction models.


Journal

Journal of biomedical informatics
ISSN: 1532-0480
Titre abrégé: J Biomed Inform
Pays: United States
ID NLM: 100970413

Informations de publication

Date de publication:
10 2022
Historique:
received: 01 02 2022
revised: 18 07 2022
accepted: 15 08 2022
pubmed: 26 8 2022
medline: 14 10 2022
entrez: 25 8 2022
Statut: ppublish

Résumé

For multi-center heterogeneous Real-World Data (RWD) with time-to-event outcomes and high-dimensional features, we propose the SurvMaximin algorithm to estimate Cox model feature coefficients for a target population by borrowing summary information from a set of health care centers without sharing patient-level information. For each of the centers from which we want to borrow information to improve the prediction performance for the target population, a penalized Cox model is fitted to estimate feature coefficients for the center. Using estimated feature coefficients and the covariance matrix of the target population, we then obtain a SurvMaximin estimated set of feature coefficients for the target population. The target population can be an entire cohort comprised of all centers, corresponding to federated learning, or a single center, corresponding to transfer learning. Simulation studies and a real-world international electronic health records application study, with 15 participating health care centers across three countries (France, Germany, and the U.S.), show that the proposed SurvMaximin algorithm achieves comparable or higher accuracy compared with the estimator using only the information of the target site and other existing methods. The SurvMaximin estimator is robust to variations in sample sizes and estimated feature coefficients between centers, which amounts to significantly improved estimates for target sites with fewer observations. The SurvMaximin method is well suited for both federated and transfer learning in the high-dimensional survival analysis setting. SurvMaximin only requires a one-time summary information exchange from participating centers. Estimated regression vectors can be very heterogeneous. SurvMaximin provides robust Cox feature coefficient estimates without outcome information in the target population and is privacy-preserving.

Identifiants

pubmed: 36007785
pii: S1532-0464(22)00187-3
doi: 10.1016/j.jbi.2022.104176
pmc: PMC9707637
mid: NIHMS1850166
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

104176

Subventions

Organisme : NCATS NIH HHS
ID : U01 TR003528
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001881
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR000005
Pays : United States
Organisme : NLM NIH HHS
ID : R01 LM013345
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS098023
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS124882
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR002366
Pays : United States
Organisme : NICHD NIH HHS
ID : T32 HD040128
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR002541
Pays : United States
Organisme : NIEHS NIH HHS
ID : P30 ES017885
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001857
Pays : United States
Organisme : NCI NIH HHS
ID : U24 CA210967
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001420
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001878
Pays : United States
Organisme : NLM NIH HHS
ID : R01 LM013337
Pays : United States
Organisme : NHLBI NIH HHS
ID : K23 HL148394
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR002240
Pays : United States
Organisme : NHLBI NIH HHS
ID : L40 HL148910
Pays : United States

Informations de copyright

Copyright © 2022. Published by Elsevier Inc.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

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Auteurs

Xuan Wang (X)

Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA, USA.

Harrison G Zhang (HG)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Xin Xiong (X)

Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA, USA.

Chuan Hong (C)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Griffin M Weber (GM)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Gabriel A Brat (GA)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Clara-Lea Bonzel (CL)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Yuan Luo (Y)

Department of Preventive Medicine Northwestern University, Chicago, IL, USA.

Rui Duan (R)

Department of Biostatistics, Harvard University, Boston, MA, USA.

Nathan P Palmer (NP)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Meghan R Hutch (MR)

Department of Preventive Medicine Northwestern University, Chicago, IL, USA.

Alba Gutiérrez-Sacristán (A)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Riccardo Bellazzi (R)

Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy.

Luca Chiovato (L)

Unit of Internal Medicine and Endocrinology, Istituti Clinici Scientifici Maugeri SpA SB IRCCS, Pavia, Italy.

Kelly Cho (K)

Population Health and Data Science, VA Boston Healthcare System, Boston, MA, USA; Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.

Arianna Dagliati (A)

Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy.

Hossein Estiri (H)

Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.

Noelia García-Barrio (N)

Health Informatics, Hospital Universitario 12 de Octubre, Madrid, Spain.

Romain Griffier (R)

IAM unit, Bordeaux University Hospital, Bordeaux, France; INSERM Bordeaux Population Health ERIAS TEAM, ERIAS - Inserm U1219 BPH, Bordeaux, France.

David A Hanauer (DA)

Department of Learning Health Sciences, University of Michigan, Ann Arbor, MI, USA.

Yuk-Lam Ho (YL)

Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.

John H Holmes (JH)

Department of Biostatistics, Epidemiology, and Informatics University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.

Mark S Keller (MS)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Jeffrey G Klann MEng (JG)

Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.

Sehi L'Yi (S)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Sara Lozano-Zahonero (S)

Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Sarah E Maidlow (SE)

Michigan Institute for Clinical and Health Research (MICHR) Informatics, University of Michigan, Ann Arbor, MI, USA.

Adeline Makoudjou (A)

Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Alberto Malovini (A)

Laboratory of Informatics and Systems Engineering for Clinical Research, Istituti Clinici Scientifici Maugeri SpA SB IRCCS, Pavia, Italy.

Bertrand Moal (B)

IAM unit, Bordeaux University Hospital, Bordeaux, France.

Jason H Moore (JH)

Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.

Michele Morris (M)

Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.

Danielle L Mowery (DL)

Department of Biostatistics, Epidemiology, and Informatics University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.

Shawn N Murphy (SN)

Department of Neurology, Massachusetts General Hospital, Boston, MA, USA.

Antoine Neuraz (A)

Department of biomedical informatics, Hôpital Necker-Enfants Malade, Assistance Publique Hôpitaux de Paris (APHP), University of Paris, Paris, France.

Kee Yuan Ngiam (K)

Department of Biomedical informatics, WiSDM, National University Health Systems, Singapore.

Gilbert S Omenn (GS)

Depts of Computational Medicine & Bioinformatics, Internal Medicine, Human Genetics, Public Health University of Michigan, Ann Arbor, MI, USA.

Lav P Patel (LP)

Department of Internal Medicine, Division of Medical Informatics, University Of Kansas Medical Center.

Miguel Pedrera-Jiménez (M)

Health Informatics, Hospital Universitario 12 de Octubre, Madrid, Spain.

Andrea Prunotto (A)

Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Malarkodi Jebathilagam Samayamuthu (M)

Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.

Fernando J Sanz Vidorreta (FJ)

Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.

Emily R Schriver (ER)

Data Analytics Center, University of Pennsylvania Health System, Philadelphia, PA, USA.

Petra Schubert (P)

Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.

Pablo Serrano-Balazote (P)

Health Informatics, Hospital Universitario 12 de Octubre, Madrid, Spain.

Andrew M South (AM)

Department of Pediatrics-Section of Nephrology, Brenner Children's, Wake Forest School of Medicine, Winston Salem, NC, USA.

Amelia L M Tan (ALM)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Byorn W L Tan (BWL)

Department of Medicine, National University Hospital, Singapore.

Valentina Tibollo (V)

Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Patric Tippmann (P)

Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Shyam Visweswaran (S)

Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.

Zongqi Xia (Z)

Department of Neurology, University of Pittsburgh, Pittsburgh, PA, USA.

William Yuan (W)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Daniela Zöller (D)

Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Isaac S Kohane (IS)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Paul Avillach (P)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Zijian Guo (Z)

Department of Statistics, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.

Tianxi Cai (T)

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

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