Current trends in COVID-19 diagnosis and its new variants in physiological fluids: Surface antigens, antibodies, nucleic acids, and RNA sequencing.
Biosensors
COVID-19 virus diagnosis
Clustered regularly interspaced short palindromic repeats
Enzyme-linked immunosorbent assay
Lateral flow immunoassay
Loop-mediated isothermal amplification
Microarray assays
Reverse transcriptase-polymerase chain reaction
Journal
Trends in analytical chemistry : TRAC
ISSN: 0165-9936
Titre abrégé: Trends Analyt Chem
Pays: Netherlands
ID NLM: 8105858
Informations de publication
Date de publication:
Dec 2022
Dec 2022
Historique:
received:
20
01
2022
revised:
21
06
2022
accepted:
24
07
2022
pubmed:
6
9
2022
medline:
6
9
2022
entrez:
5
9
2022
Statut:
ppublish
Résumé
Rapid, highly sensitive, and accurate virus circulation monitoring techniques are critical to limit the spread of the virus and reduce the social and economic burden. Therefore, point-of-use diagnostic devices have played a critical role in addressing the outbreak of COVID-19 (SARS-CoV-2) viruses. This review provides a comprehensive overview of the current techniques developed for the detection of SARS-CoV-2 in various body fluids (e.g., blood, urine, feces, saliva, tears, and semen) and considers the mutations (i.e., Alpha, Beta, Gamma, Delta, Omicron). We classify and comprehensively discuss the detection methods depending on the biomarker measured (i.e., surface antigen, antibody, and nucleic acid) and the measurement techniques such as lateral flow immunoassay (LFIA), enzyme-linked immunosorbent assay (ELISA), reverse transcriptase-polymerase chain reaction (RT-PCR), reverse transcription loop-mediated isothermal amplification (RT-LAMP), microarray analysis, clustered regularly interspaced short palindromic repeats (CRISPR) and biosensors. Finally, we addressed the challenges of rapidly identifying emerging variants, detecting the virus in the early stages of infection, the detection sensitivity, selectivity, and specificity, and commented on how these challenges can be overcome in the future.
Identifiants
pubmed: 36060607
doi: 10.1016/j.trac.2022.116750
pii: S0165-9936(22)00233-3
pmc: PMC9425703
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
116750Informations de copyright
© 2022 The Authors.
Déclaration de conflit d'intérêts
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Références
Am J Trop Med Hyg. 2021 Feb 26;104(4):1516-1518
pubmed: 33635827
Biotechnol Prog. 2021 Jan;37(1):e3078
pubmed: 32902193
Lancet. 2020 Feb 15;395(10223):514-523
pubmed: 31986261
Nat Rev Mol Cell Biol. 2019 Aug;20(8):490-507
pubmed: 31147612
Nanoscale. 2021 Jun 14;13(22):10133-10142
pubmed: 34060584
Nucleic Acids Res. 2000 Jun 15;28(12):E63
pubmed: 10871386
Respirology. 2003 Nov;8 Suppl:S9-14
pubmed: 15018127
Antiviral Res. 2014 Sep;109:97-109
pubmed: 24995382
Materials (Basel). 2021 Oct 11;14(20):
pubmed: 34683568
JAMA. 2020 Aug 25;324(8):782-793
pubmed: 32648899
Int J Prev Med. 2020 Jul 09;11:97
pubmed: 33042494
Adv Mater. 2021 Jan;33(1):e2005448
pubmed: 33230875
Biopolymers. 2022 Apr;113(4):e23485
pubmed: 35023571
Infez Med. 2020 Ahead of print Jun 1;28(2):174-184
pubmed: 32275259
Trends Biotechnol. 2019 Jul;37(7):730-743
pubmed: 30654914
Biol Proced Online. 2020 Sep 14;22:22
pubmed: 32939188
Genomics Proteomics Bioinformatics. 2003 May;1(2):118-30
pubmed: 15626342
Anal Chim Acta. 2022 Sep 8;1225:340226
pubmed: 36038236
Int J Infect Dis. 2020 Apr;93:264-267
pubmed: 32114193
Biosens Bioelectron. 2022 May 15;204:114076
pubmed: 35180691
ACS Sens. 2022 Mar 25;7(3):730-739
pubmed: 35192340
Cochrane Database Syst Rev. 2020 Jun 25;6:CD013652
pubmed: 32584464
Turk J Med Sci. 2020 Apr 15;50(SI-1):549-556
pubmed: 32293832
Front Microbiol. 2021 Nov 18;12:713713
pubmed: 34867841
Travel Med Infect Dis. 2020 Sep-Oct;37:101673
pubmed: 32311437
Euro Surveill. 2020 Jan;25(3):
pubmed: 31992387
N Engl J Med. 2020 Feb 20;382(8):727-733
pubmed: 31978945
JAMA. 2020 Mar 17;323(11):1061-1069
pubmed: 32031570
Science. 2016 Aug 5;353(6299):aaf5573
pubmed: 27256883
Biosens Bioelectron. 2015 Nov 15;73:47-63
pubmed: 26043315
ACS Nano. 2020 Jun 23;14(6):7617-7627
pubmed: 32437124
ACS Nano. 2020 May 26;14(5):5268-5277
pubmed: 32281785
J Med Virol. 2020 Jun;92(6):589-594
pubmed: 32100876
Sci Rep. 2021 Mar 2;11(1):4943
pubmed: 33654146
ACS Sens. 2020 Oct 23;5(10):3043-3048
pubmed: 32989986
Sci Rep. 2021 Aug 18;11(1):16740
pubmed: 34408169
Talanta. 2022 Apr 1;240:123211
pubmed: 34999319
Sci Rep. 2021 Oct 11;11(1):15409
pubmed: 34635702
Anal Chem. 2020 Aug 4;92(15):10196-10209
pubmed: 32573207
Malays J Pathol. 2020 Apr;42(1):3-11
pubmed: 32342926
Talanta. 2021 Oct 1;233:122532
pubmed: 34215035
Chem Eng J. 2022 Feb 1;429:132332
pubmed: 34539223
Sensors (Basel). 2021 Apr 03;21(7):
pubmed: 33916661
Acta Pharmacol Sin. 2020 Sep;41(9):1141-1149
pubmed: 32747721
J Raman Spectrosc. 2021 Dec;52(12):2671-2682
pubmed: 34518728
Nat Biotechnol. 2020 Jul;38(7):870-874
pubmed: 32300245
Cureus. 2020 Aug 3;12(8):e9540
pubmed: 32905500
J Microbiol Biotechnol. 2014 Oct;24(10):1445-54
pubmed: 24950883
J Clin Virol. 2020 Aug;129:104500
pubmed: 32585619
Chem Eng J. 2021 Feb 1;405:126893
pubmed: 32901196
Cochrane Database Syst Rev. 2021 Feb 23;2:CD013665
pubmed: 33620086
Adv Sci (Weinh). 2022 Jan;9(3):e2103287
pubmed: 34877818
Lancet Respir Med. 2021 Feb;9(2):e20-e21
pubmed: 33417829
Ann Intern Med. 2020 Sep 1;173(5):362-367
pubmed: 32491919
Microb Biotechnol. 2020 Jul;13(4):950-961
pubmed: 32333644
Clin Infect Dis. 2020 Jul 28;71(15):713-720
pubmed: 32129843
Nucleic Acids Res. 2022 May 6;50(8):e47
pubmed: 35166837
Nat Protoc. 2019 Oct;14(10):2986-3012
pubmed: 31548639
BMJ. 2020 May 12;369:m1808
pubmed: 32398230
Pathogens. 2020 Jun 30;9(7):
pubmed: 32629960
Biology (Basel). 2020 Jul 22;9(8):
pubmed: 32707972
ACS Infect Dis. 2020 Sep 11;6(9):2513-2523
pubmed: 32786273
ACS Nano. 2020 Sep 22;14(9):12125-12132
pubmed: 32808759
ACS Nano. 2020 Apr 28;14(4):5135-5142
pubmed: 32293168
Front Cell Dev Biol. 2020 Jun 04;8:468
pubmed: 32582718
Anal Chem. 2021 Feb 2;93(4):2191-2199
pubmed: 33427452
J Clin Microbiol. 2014 Jan;52(1):76-82
pubmed: 24153120
Sci Rep. 2021 Oct 7;11(1):19980
pubmed: 34620977
J Virol. 2005 Dec;79(23):14614-21
pubmed: 16282461
Trends Immunol. 2020 Dec;41(12):1100-1115
pubmed: 33132005
Anal Chim Acta. 2021 Oct 16;1182:338939
pubmed: 34602210
Cell. 2021 Jan 21;184(2):323-333.e9
pubmed: 33306959
Nat Commun. 2021 Feb 2;12(1):740
pubmed: 33531472
Intervirology. 2010;53(2):95-104
pubmed: 19955814
Diagnostics (Basel). 2021 Apr 14;11(4):
pubmed: 33919728
Biosens Bioelectron. 2021 Jan 1;171:112685
pubmed: 33113383
Int J Surg. 2020 Sep;81:1-8
pubmed: 32730205
Bratisl Lek Listy. 2020;121(12):864
pubmed: 33300355
SN Compr Clin Med. 2020;2(10):1798-1801
pubmed: 32904860
J Med Eng Technol. 2021 Aug;45(6):423-433
pubmed: 33998955
Nature. 2016 Oct 13;538(7624):270-273
pubmed: 27669025
Analyst. 2020 Aug 7;145(15):5345-5352
pubmed: 32568341
Infect Dis Ther. 2021 Jun;10(2):753-761
pubmed: 33629225
Euro Surveill. 2017 Mar 30;22(13):
pubmed: 28382917
N Engl J Med. 2020 Jun 18;382(25):2472-2474
pubmed: 32558475
Analyst. 2021 Mar 7;146(5):1489-1513
pubmed: 33543178
Chem Eng J. 2022 Feb 15;430:132966
pubmed: 34690533
Nat Commun. 2021 Feb 9;12(1):972
pubmed: 33563978
J Biophotonics. 2020 Oct;13(10):e202000189
pubmed: 32609429
Osong Public Health Res Perspect. 2020 Jun;11(3):112-117
pubmed: 32528816
Biosens Bioelectron. 2021 Jun 1;181:113160
pubmed: 33740542
Sci Adv. 2020 Aug 14;6(33):eabc1202
pubmed: 32851189
Microorganisms. 2021 Apr 17;9(4):
pubmed: 33920724
Sens Actuators B Chem. 2021 Oct 15;345:130394
pubmed: 34248283
Adv Virus Res. 2019;105:93-116
pubmed: 31522710
Elife. 2020 Apr 02;9:
pubmed: 32228860
Anaesth Crit Care Pain Med. 2022 Feb;41(1):100998
pubmed: 34902630
J Pathog. 2020 Oct 18;2020:9121429
pubmed: 33133697
Lancet Microbe. 2021 Jul;2(7):e311-e319
pubmed: 33846704
Science. 2017 Nov 24;358(6366):1019-1027
pubmed: 29070703
Nat Rev Microbiol. 2020 Feb;18(2):67-83
pubmed: 31857715
Biosens Bioelectron. 2019 Mar 1;128:68-75
pubmed: 30634076
Emerg Infect Dis. 2004 Jun;10(6):1143-6
pubmed: 15207072
Mol Cell. 2018 Nov 1;72(3):404-412
pubmed: 30388409
Front Microbiol. 2020 Sep 30;11:580137
pubmed: 33101254
J Med Virol. 2020 Apr;92(4):418-423
pubmed: 31967327
Sci Rep. 2022 Mar 3;12(1):3549
pubmed: 35241780
Carbohydr Polym. 2022 Feb 15;278:118956
pubmed: 34973772
Int J Biol Sci. 2020 Mar 15;16(10):1698-1707
pubmed: 32226287
Saudi Pharm J. 2020 Nov;28(11):1481-1491
pubmed: 32994704
Sci Total Environ. 2022 Feb 20;808:152033
pubmed: 34883175
Microorganisms. 2021 Jan 22;9(2):
pubmed: 33499379
Cell Host Microbe. 2020 Mar 11;27(3):325-328
pubmed: 32035028
J Clin Virol. 2020 Aug;129:104439
pubmed: 32674034
Sci China Life Sci. 2020 Mar;63(3):457-460
pubmed: 32009228
Talanta. 2021 Apr 1;225:122004
pubmed: 33592744
Diagnostics (Basel). 2021 Feb 10;11(2):
pubmed: 33578665
Microbes Infect. 2020 May - Jun;22(4-5):206-211
pubmed: 32425648
Viruses. 2021 Jun 10;13(6):
pubmed: 34200602
Front Cell Infect Microbiol. 2021 May 28;11:680728
pubmed: 34123877
Emerg Infect Dis. 2020 Jul;26(7):1478-1488
pubmed: 32267220
Emerg Infect Dis. 2020 Oct;26(10):2401-2405
pubmed: 32610037
Biosens Bioelectron. 2018 Feb 15;100:541-548
pubmed: 28992610
Clin Infect Dis. 2020 Jul 28;71(15):841-843
pubmed: 32047895
JAMA Ophthalmol. 2020 May 01;138(5):575-578
pubmed: 32232433
Science. 2017 Apr 28;356(6336):438-442
pubmed: 28408723
Int Immunopharmacol. 2020 Sep;86:106746
pubmed: 32619956
Chin Sci Bull. 2003;48(12):1165-1169
pubmed: 32214700
Talanta. 2022 Apr 1;240:123203
pubmed: 34998140
N Engl J Med. 2020 Apr 16;382(16):1564-1567
pubmed: 32182409
Virusdisease. 2020 Jun;31(2):97-105
pubmed: 32656306
Biosens Bioelectron. 2022 Jun 1;205:114094
pubmed: 35202985
Biosens Bioelectron. 2020 Oct 1;165:112454
pubmed: 32729549
JAMA Netw Open. 2020 May 1;3(5):e208292
pubmed: 32379329
Lancet. 2021 Dec 11;398(10317):2126-2128
pubmed: 34871545
Nat Mater. 2021 May;20(5):593-605
pubmed: 33589798
Int J Mol Sci. 2020 Feb 07;21(3):
pubmed: 32046217
Crit Care. 2020 Jul 13;24(1):422
pubmed: 32660650
Sci Transl Med. 2020 Jun 3;12(546):
pubmed: 32493791
J Med Virol. 2020 Jul;92(7):833-840
pubmed: 32243607
Mol Cell. 2015 Nov 5;60(3):385-97
pubmed: 26593719
Arch Med Res. 2020 Aug;51(6):482-491
pubmed: 32493627
Clin Infect Dis. 2020 Jun 16;:
pubmed: 32556191
Emerg Microbes Infect. 2020 Dec;9(1):386-389
pubmed: 32065057
Nat Biomed Eng. 2021 Jul;5(7):666-677
pubmed: 34031558
Nat Commun. 2021 Mar 22;12(1):1813
pubmed: 33753738
Biophys Chem. 2021 Mar;270:106538
pubmed: 33418105
Biosens Bioelectron. 2021 Jan 1;171:112709
pubmed: 33075724
Biosens Bioelectron. 2021 Jan 1;171:112715
pubmed: 33099241
Electrochim Acta. 2022 Jan 20;403:139581
pubmed: 34898691
Clin Transl Med. 2021 Dec;11(12):e680
pubmed: 34898050
Science. 2018 Apr 27;360(6387):444-448
pubmed: 29700266
Nanomaterials (Basel). 2022 Jan 28;12(3):
pubmed: 35159802
ACS Cent Sci. 2020 May 27;6(5):591-605
pubmed: 32382657
Nat Biotechnol. 2021 Aug;39(8):928-935
pubmed: 33767397
Mikrochim Acta. 2021 May 26;188(6):199
pubmed: 34041585
Appl Phys Rev. 2021 Sep;8(3):031313
pubmed: 34552683
ACS Sens. 2020 Dec 24;5(12):3655-3677
pubmed: 33267587
Expert Rev Mol Diagn. 2020 Sep;20(9):985-993
pubmed: 32845192
Biosens Bioelectron. 2022 Mar 15;200:113900
pubmed: 34959185
Cell. 2017 Jan 12;168(1-2):20-36
pubmed: 27866654
ACS Nano. 2020 Dec 22;14(12):17028-17045
pubmed: 33079516