Germline RB1 Mutation in Retinoblastoma Patients: Detection Methods and Implication in Tumor Focality.
Journal
Translational vision science & technology
ISSN: 2164-2591
Titre abrégé: Transl Vis Sci Technol
Pays: United States
ID NLM: 101595919
Informations de publication
Date de publication:
01 09 2022
01 09 2022
Historique:
entrez:
29
9
2022
pubmed:
30
9
2022
medline:
4
10
2022
Statut:
ppublish
Résumé
The study aimed to generate a stepwise method to reduce the workload of full-scale RB1 sequencing for germline mutation screening in retinoblastoma (RB) patients. The implication of germline mutation in tumor focality was also determined in this study. A stepwise method was created on the basis of "hotspot" exons analyzed using data on germline RB1 mutation in the RB1-Leiden Open Variation Database and then tested for mutation screening in the blood DNA of 42 patients with RB. The method was compared with the clinical next-generation sequencing (NGS) panel in terms of sequencing outcomes. The germline RB1 mutation was examined in association with multifocality in RB. Germline RB1 mutation was identified in 61% of all bilateral cases in the first step of the 3 stepwise method and in 78% and 89% for the two and three steps combined, respectively. NGS detected a mosaic variant of RB1 that was not detected by the first two steps and increased the sensitivity from 78% to 83%. Analysis of the relationship between mutation status and tumor focality indicated that multifocality in RB was dependent on germline RB1 mutation, confirming a higher tendency to have a germline RB1 mutation in patients with multifocal RB. A 3 stepwise method reduces the workload needed for sequencing of the RB1 for bilateral cases. NGS outweighs conventional sequencing in terms of the identification of germline mosaic variants. Multifocal tumors in RB may be used to presume germline mutation. The presence of "hotspot" exons of germline RB1 mutation in bilateral cases facilitates a mutation screening. However, when genetic testing is not available, multifocality in RB regardless of tumor laterality is predictive of germline RB1 mutation.
Identifiants
pubmed: 36173648
pii: 2783697
doi: 10.1167/tvst.11.9.30
pmc: PMC9527333
doi:
Substances chimiques
RB1 protein, human
0
Retinoblastoma Binding Proteins
0
DNA
9007-49-2
Ubiquitin-Protein Ligases
EC 2.3.2.27
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
30Références
Front Genet. 2020 Mar 11;11:142
pubmed: 32218800
Ophthalmology. 2020 Nov;127(11):1549-1557
pubmed: 32422154
PLoS One. 2017 Jun 2;12(6):e0178776
pubmed: 28575107
Mol Vis. 2021 Jan 06;27:1-16
pubmed: 33456302
Eur J Hum Genet. 2015 Nov;23(11):1523-30
pubmed: 25712084
Arch Ophthalmol. 2008 Sep;126(9):1308-9
pubmed: 18779498
Pediatr Blood Cancer. 2008 Nov;51(5):598-602
pubmed: 18661485
J Mol Diagn. 2016 Jul;18(4):480-93
pubmed: 27155049
Mol Vis. 2016 Aug 16;22:1036-47
pubmed: 27582626
Hematol Oncol Stem Cell Ther. 2020 Sep;13(3):152-159
pubmed: 32222358
J Hum Genet. 2020 Jan;65(2):165-174
pubmed: 31772335
Hum Mutat. 2014 Mar;35(3):384-91
pubmed: 24282159
Fam Cancer. 2018 Apr;17(2):261-268
pubmed: 28803391
BMC Cancer. 2015 Nov 04;15:841
pubmed: 26530098
Ophthalmic Genet. 2014 Dec;35(4):193-207
pubmed: 25321846
Nat Commun. 2021 Feb 23;12(1):1243
pubmed: 33623049
JAMA Ophthalmol. 2020 Aug 1;138(8):843-850
pubmed: 32556071
Br J Cancer. 2021 Mar;124(7):1312-1319
pubmed: 33473166
J Hum Genet. 2015 Sep;60(9):547-52
pubmed: 26084579
Mol Vis. 2019 Apr 04;25:215-221
pubmed: 30996590
Genet Med. 2015 May;17(5):405-24
pubmed: 25741868
Proc Natl Acad Sci U S A. 1971 Apr;68(4):820-3
pubmed: 5279523
Mol Clin Oncol. 2021 Sep;15(3):182
pubmed: 34277001
Mol Vis. 2015 Oct 14;21:1185-90
pubmed: 26539030
Trends Biochem Sci. 2013 Jan;38(1):12-9
pubmed: 23218751
BMC Cancer. 2015 Apr 28;15:320
pubmed: 25928201
J Med Genet. 2001 Jun;38(6):385-8
pubmed: 11424919
Cancers (Basel). 2021 Mar 31;13(7):
pubmed: 33807189
Mol Vis. 2018 Dec 09;24:778-788
pubmed: 30636860