A blood DNA methylation biomarker for predicting short-term risk of cardiovascular events.


Journal

Clinical epigenetics
ISSN: 1868-7083
Titre abrégé: Clin Epigenetics
Pays: Germany
ID NLM: 101516977

Informations de publication

Date de publication:
29 09 2022
Historique:
received: 24 05 2022
accepted: 13 09 2022
entrez: 29 9 2022
pubmed: 30 9 2022
medline: 4 10 2022
Statut: epublish

Résumé

Recent evidence highlights the epidemiological value of blood DNA methylation (DNAm) as surrogate biomarker for exposure to risk factors for non-communicable diseases (NCD). DNAm surrogate of exposures predicts diseases and longevity better than self-reported or measured exposures in many cases. Consequently, disease prediction models based on blood DNAm surrogates may outperform current state-of-the-art prediction models. This study aims to develop novel DNAm surrogates for cardiovascular diseases (CVD) risk factors and develop a composite biomarker predictive of CVD risk. We compared the prediction performance of our newly developed risk score with the state-of-the-art DNAm risk scores for cardiovascular diseases, the 'next-generation' epigenetic clock DNAmGrimAge, and the prediction model based on traditional risk factors SCORE2. Using data from the EPIC Italy cohort, we derived novel DNAm surrogates for BMI, blood pressure, fasting glucose and insulin, cholesterol, triglycerides, and coagulation biomarkers. We validated them in four independent data sets from Europe and the USA. Further, we derived a DNAmCVDscore predictive of the time-to-CVD event as a combination of several DNAm surrogates. ROC curve analyses show that DNAmCVDscore outperforms previously developed DNAm scores for CVD risk and SCORE2 for short-term CVD risk. Interestingly, the performance of DNAmGrimAge and DNAmCVDscore was comparable (slightly lower for DNAmGrimAge, although the differences were not statistically significant). We described novel DNAm surrogates for CVD risk factors useful for future molecular epidemiology research, and we described a blood DNAm-based composite biomarker, DNAmCVDscore, predictive of short-term cardiovascular events. Our results highlight the usefulness of DNAm surrogate biomarkers of risk factors in epigenetic epidemiology to identify high-risk populations. In addition, we provide further evidence on the effectiveness of prediction models based on DNAm surrogates and discuss methodological aspects for further improvements. Finally, our results encourage testing this approach for other NCD diseases by training and developing DNAm surrogates for disease-specific risk factors and exposures.

Sections du résumé

BACKGROUND
Recent evidence highlights the epidemiological value of blood DNA methylation (DNAm) as surrogate biomarker for exposure to risk factors for non-communicable diseases (NCD). DNAm surrogate of exposures predicts diseases and longevity better than self-reported or measured exposures in many cases. Consequently, disease prediction models based on blood DNAm surrogates may outperform current state-of-the-art prediction models. This study aims to develop novel DNAm surrogates for cardiovascular diseases (CVD) risk factors and develop a composite biomarker predictive of CVD risk. We compared the prediction performance of our newly developed risk score with the state-of-the-art DNAm risk scores for cardiovascular diseases, the 'next-generation' epigenetic clock DNAmGrimAge, and the prediction model based on traditional risk factors SCORE2.
RESULTS
Using data from the EPIC Italy cohort, we derived novel DNAm surrogates for BMI, blood pressure, fasting glucose and insulin, cholesterol, triglycerides, and coagulation biomarkers. We validated them in four independent data sets from Europe and the USA. Further, we derived a DNAmCVDscore predictive of the time-to-CVD event as a combination of several DNAm surrogates. ROC curve analyses show that DNAmCVDscore outperforms previously developed DNAm scores for CVD risk and SCORE2 for short-term CVD risk. Interestingly, the performance of DNAmGrimAge and DNAmCVDscore was comparable (slightly lower for DNAmGrimAge, although the differences were not statistically significant).
CONCLUSIONS
We described novel DNAm surrogates for CVD risk factors useful for future molecular epidemiology research, and we described a blood DNAm-based composite biomarker, DNAmCVDscore, predictive of short-term cardiovascular events. Our results highlight the usefulness of DNAm surrogate biomarkers of risk factors in epigenetic epidemiology to identify high-risk populations. In addition, we provide further evidence on the effectiveness of prediction models based on DNAm surrogates and discuss methodological aspects for further improvements. Finally, our results encourage testing this approach for other NCD diseases by training and developing DNAm surrogates for disease-specific risk factors and exposures.

Identifiants

pubmed: 36175966
doi: 10.1186/s13148-022-01341-4
pii: 10.1186/s13148-022-01341-4
pmc: PMC9521011
doi:

Substances chimiques

Genetic Markers 0
Insulins 0
Triglycerides 0
Glucose IY9XDZ35W2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

121

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/K023241/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_20026
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/S03532X/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/N01104X/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_22005
Pays : United Kingdom
Organisme : NIA NIH HHS
ID : R01 AG068937
Pays : United States

Informations de copyright

© 2022. The Author(s).

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Auteurs

Andrea Cappozzo (A)

MOX - Laboratory for Modeling and Scientific Computing, Department of Mathematics, Politecnico di Milano, Milan, Italy.

Cathal McCrory (C)

Department of Medical Gerontology, Trinity College Dublin, Dublin, Ireland.

Oliver Robinson (O)

MRC-PHE Centre for Environment and Health, Imperial College London, London, UK.

Anna Freni Sterrantino (A)

MRC-PHE Centre for Environment and Health, Imperial College London, London, UK.
The Alan Turing Institute, London, UK.

Carlotta Sacerdote (C)

Unit of Cancer Epidemiology, Città della Salute e della Scienza University-Hospital, Turin, Italy.

Vittorio Krogh (V)

Fondazione IRCCS - Istituto Nazionale dei Tumori, Milan, Italy.

Salvatore Panico (S)

Department of Clinical Medicine and Surgery, University of Naples Federico II, Naples, Italy.

Rosario Tumino (R)

Association for Epidemiology Research, AIRE ONLYS, Ragusa, Italy.

Licia Iacoviello (L)

Department of Epidemiology and Prevention, IRCCS NEUROMED, Pozzilli, Italy.
Department of Medicine and Surgery, Research Center in Epidemiology and Preventive Medicine (EPIMED), Turin, Italy.

Fulvio Ricceri (F)

Epidemiology Unit, Regional Health Service TO3, Grugliasco, Italy.
Department of Clinical and Biological Sciences, Centre for Biostatistics, Epidemiology, and Public Health (C-BEPH), University of Turin, Turin, Italy.

Sabina Sieri (S)

Fondazione IRCCS - Istituto Nazionale dei Tumori, Milan, Italy.

Paolo Chiodini (P)

Department of Mental, Physical Health and Preventive Medicine, University of Campania 'Luigi Vanvitelli', Caserta, Italy.

Gareth J McKay (GJ)

Centre for Public Health, Queen's University Belfast, Belfast, UK.

Amy Jayne McKnight (AJ)

Centre for Public Health, Queen's University Belfast, Belfast, UK.

Frank Kee (F)

Centre for Public Health, Queen's University Belfast, Belfast, UK.

Ian S Young (IS)

Centre for Public Health, Queen's University Belfast, Belfast, UK.

Bernadette McGuinness (B)

Centre for Public Health, Queen's University Belfast, Belfast, UK.

Eileen M Crimmins (EM)

Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.

Thalida Em Arpawong (TE)

Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.

Rose Anne Kenny (RA)

Department of Medical Gerontology, Trinity College Dublin, Dublin, Ireland.

Aisling O'Halloran (A)

Department of Medical Gerontology, Trinity College Dublin, Dublin, Ireland.

Silvia Polidoro (S)

Italian Institute for Genomic Medicine (IIGM), Turin, Italy.

Giuliana Solinas (G)

Laboratory Biostatistics, Department of Biomedical Sciences, University of Sassari, Via Padre Manzella 4, Sassari, Italy.

Paolo Vineis (P)

MRC-PHE Centre for Environment and Health, Imperial College London, London, UK.

Francesca Ieva (F)

MOX - Laboratory for Modeling and Scientific Computing, Department of Mathematics, Politecnico di Milano, Milan, Italy.
CHDS - Health Data Science Center, Human Technopole, Milan, Italy.

Giovanni Fiorito (G)

Department of Medical Gerontology, Trinity College Dublin, Dublin, Ireland. gfiorito@uniss.it.
MRC-PHE Centre for Environment and Health, Imperial College London, London, UK. gfiorito@uniss.it.
Laboratory Biostatistics, Department of Biomedical Sciences, University of Sassari, Via Padre Manzella 4, Sassari, Italy. gfiorito@uniss.it.

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