Single-chain insulin analogs threaded by the insulin receptor αCT domain.
Journal
Biophysical journal
ISSN: 1542-0086
Titre abrégé: Biophys J
Pays: United States
ID NLM: 0370626
Informations de publication
Date de publication:
01 11 2022
01 11 2022
Historique:
received:
17
06
2022
revised:
12
09
2022
accepted:
28
09
2022
pubmed:
2
10
2022
medline:
5
11
2022
entrez:
1
10
2022
Statut:
ppublish
Résumé
Insulin is a mainstay of therapy for diabetes mellitus, yet its thermal stability complicates global transportation and storage. Cold-chain transport, coupled with optimized formulation and materials, prevents to some degree nucleation of amyloid and hence inactivation of hormonal activity. These issues hence motivate the design of analogs with increased stability, with a promising approach being single-chain insulins (SCIs), whose C domains (foreshortened relative to proinsulin) resemble those of the single-chain growth factors (IGFs). We have previously demonstrated that optimized SCIs can exhibit native-like hormonal activity with enhanced thermal stability and marked resistance to fibrillation. Here, we describe the crystal structure of an ultrastable SCI (C-domain length 6; sequence EEGPRR) bound to modules of the insulin receptor (IR) ectodomain (N-terminal α-subunit domains L1-CR and C-terminal αCT peptide; "microreceptor" [μIR]). The structure of the SCI-μIR complex, stabilized by an Fv module, was determined using diffraction data to a resolution of 2.6 Å. Remarkably, the αCT peptide (IR-A isoform) "threads" through a gap between the flexible C domain and the insulin core. To explore such threading, we undertook molecular dynamics simulations to 1) compare threaded with unthreaded binding modes and 2) evaluate effects of C-domain length on these alternate modes. The simulations (employing both conventional and enhanced sampling simulations) provide evidence that very short linkers (C-domain length of -1) would limit gap opening in the SCI and so impair threading. We envisage that analogous threading occurs in the intact SCI-IR complex-rationalizing why minimal C-domain lengths block complete activity-and might be exploited to design novel receptor-isoform-specific analogs.
Identifiants
pubmed: 36181268
pii: S0006-3495(22)00815-3
doi: 10.1016/j.bpj.2022.09.038
pmc: PMC9675026
pii:
doi:
Substances chimiques
Receptor, Insulin
EC 2.7.10.1
Insulin
0
Peptides
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
4063-4077Subventions
Organisme : NIDDK NIH HHS
ID : R01 DK124401
Pays : United States
Informations de copyright
Copyright © 2022 Biophysical Society. All rights reserved.
Déclaration de conflit d'intérêts
Declaration of interests M.A.W. is a co-founder of Thermalin, Inc. for which he has served as Chief Innovation Officer, has consulted, and holds stock.
Références
Structure. 2022 Aug 4;30(8):1098-1108.e6
pubmed: 35660159
J Chem Theory Comput. 2012 Sep 11;8(9):3257-3273
pubmed: 23341755
Curr Opin Struct Biol. 1998 Apr;8(2):189-94
pubmed: 9631292
Structure. 2020 Jul 7;28(7):786-798.e6
pubmed: 32459985
Protein Sci. 2018 Jan;27(1):293-315
pubmed: 29067766
Biochem J. 2011 Dec 15;440(3):301-8
pubmed: 21851336
J Mol Biol. 1991 Jul 20;220(2):425-33
pubmed: 1856866
J Biol Chem. 2018 Jan 5;293(1):69-88
pubmed: 29114034
Science. 2012 May 25;336(6084):1030-3
pubmed: 22628654
Curr Protoc Bioinformatics. 2016 Jun 20;54:5.6.1-5.6.37
pubmed: 27322406
Structure. 2015 Jul 7;23(7):1271-82
pubmed: 26027733
J Biol Chem. 2019 Nov 15;294(46):17371-17382
pubmed: 31558604
Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12429-34
pubmed: 16894147
J Pharm Sci. 1997 May;86(5):517-25
pubmed: 9145374
Endocr Rev. 2017 Oct 1;38(5):379-431
pubmed: 28973479
J Biol Chem. 2010 Mar 12;285(11):7847-51
pubmed: 20106974
PLoS One. 2021 Jun 16;16(6):e0253168
pubmed: 34133466
Proteins. 2008 Apr;71(1):426-39
pubmed: 17957771
PLoS One. 2014 Nov 25;9(11):e112883
pubmed: 25423173
RSC Med Chem. 2022 Feb 21;13(4):360-374
pubmed: 35647546
J Biol Chem. 1989 Jan 5;264(1):272-9
pubmed: 2642474
J Mol Biol. 2022 Mar 15;434(5):167458
pubmed: 35074483
Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):
pubmed: 34290145
J Mol Biol. 1998 May 29;279(1):1-7
pubmed: 9636695
Mol Immunol. 2010 Aug;47(14):2422-6
pubmed: 20554002
Mol Metab. 2021 Oct;52:101194
pubmed: 33610859
Nature. 2006 Sep 14;443(7108):218-21
pubmed: 16957736
Biol Chem Hoppe Seyler. 1985 May;366(5):521-5
pubmed: 3890892
Elife. 2019 Aug 22;8:
pubmed: 31436533
PLoS One. 2015 Dec 02;10(12):e0144058
pubmed: 26629689
Diabetes Res Clin Pract. 2022 Jan;183:109083
pubmed: 34883188
J Biol Chem. 2020 Mar 6;295(10):3080-3098
pubmed: 32005662
Biochem J. 2011 Dec 15;440(3):397-403
pubmed: 21838706
Nat Chem Biol. 2022 May;18(5):511-519
pubmed: 35289328
Hoppe Seylers Z Physiol Chem. 1981 Jun;362(6):755-61
pubmed: 7024090
J Mol Biol. 1998 Mar 20;277(1):103-18
pubmed: 9514738
Acta Crystallogr D Biol Crystallogr. 2001 Jan;57(Pt 1):122-33
pubmed: 11134934
Nat Struct Mol Biol. 2020 Jul;27(7):615-624
pubmed: 32483339
Nature. 2013 Jan 10;493(7431):241-5
pubmed: 23302862
Diabetes Res Clin Pract. 1989 Jun 20;7(1):25-8
pubmed: 2666066
J Synchrotron Radiat. 2018 May 1;25(Pt 3):885-891
pubmed: 29714201
J Diabetes Sci Technol. 2021 Jan;15(1):147-159
pubmed: 31994414
Biomacromolecules. 2021 Aug 9;22(8):3386-3395
pubmed: 34213889
Biochem J. 1986 Apr 1;235(1):199-208
pubmed: 2427071
Nature. 2018 Apr 5;556(7699):122-125
pubmed: 29512653
Nat Med. 2021 Jul;27(7):1154-1164
pubmed: 34267380
Biochemistry. 2009 Jun 16;48(23):5492-500
pubmed: 19459609
Biochem J. 1995 Feb 1;305 ( Pt 3):981-6
pubmed: 7848300
J Chem Theory Comput. 2008 Jan;4(1):116-22
pubmed: 26619985
J Biol Chem. 2013 Apr 12;288(15):10230-40
pubmed: 23447530
Front Endocrinol (Lausanne). 2017 Jul 27;8:167
pubmed: 28798723
Biochem Biophys Rep. 2017 Apr 18;11:182-190
pubmed: 28955783
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
J Biol Chem. 2008 May 23;283(21):14703-16
pubmed: 18332129
Int J Pept Protein Res. 1985 Jul;26(1):70-7
pubmed: 3902689
Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3395-404
pubmed: 25092300
J Diabetes Sci Technol. 2012 Mar 01;6(2):277-88
pubmed: 22538136
Philos Trans R Soc Lond B Biol Sci. 1988 Jul 6;319(1195):369-456
pubmed: 2905485
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3441-6
pubmed: 20133650
J Clin Invest. 2009 Feb;119(2):315-22
pubmed: 19164855
Annu Rev Biophys. 2013;42:121-42
pubmed: 23654303
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):368-80
pubmed: 22505257
Diabetologia. 1994 Sep;37 Suppl 2:S135-48
pubmed: 7821729
Diabetes Res Clin Pract. 2022 Jan;183:109119
pubmed: 34879977
Nature. 1991 Nov 21;354(6350):238-41
pubmed: 1961250
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
J Biol Chem. 2016 Jun 17;291(25):12978-90
pubmed: 27129279
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Nat Struct Mol Biol. 2022 Apr;29(4):357-368
pubmed: 35361965
Nat Commun. 2018 Oct 24;9(1):4420
pubmed: 30356040
J Biol Chem. 2004 May 14;279(20):21449-60
pubmed: 14988398
PLoS One. 2016 Aug 22;11(8):e0161459
pubmed: 27548502
J Med Chem. 2021 Oct 14;64(19):14848-14859
pubmed: 34591477
Anal Chem. 2012 Jun 5;84(11):5066-73
pubmed: 22530732
Nat Struct Biol. 2000 Oct;7(10):881-4
pubmed: 11017197
Biochemistry. 2004 Mar 2;43(8):2323-31
pubmed: 14979729
J Chem Theory Comput. 2011 Oct 11;7(10):3162-3180
pubmed: 22125473
Diabetes. 1974 Aug;23(8):651-6
pubmed: 4136585
J Cell Biol. 2020 Jan 6;219(1):
pubmed: 31727777
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Nat Commun. 2019 Oct 8;10(1):4567
pubmed: 31594955
J Mol Biol. 1996 Apr 26;258(1):136-57
pubmed: 8613983
Diabetologia. 2021 May;64(5):1016-1029
pubmed: 33710398
PLoS One. 2011;6(5):e20288
pubmed: 21625452
Mol Metab. 2021 Oct;52:101255
pubmed: 33992784
Proteins. 2001 Nov 15;45(3):281-2
pubmed: 11599031
J Biol Chem. 2018 Jan 5;293(1):47-68
pubmed: 29114035
Nat Commun. 2018 Feb 26;9(1):821
pubmed: 29483580
Sci China C Life Sci. 2001 Dec;44(6):593-600
pubmed: 18763100
Biochem Biophys Res Commun. 1973 Nov 1;55(1):154-61
pubmed: 4361269
J Clin Endocrinol Metab. 2022 Mar 24;107(4):909-928
pubmed: 34850005
Protein Sci. 2007 Jan;16(1):30-42
pubmed: 17192587