The population genomic legacy of the second plague pandemic.

Humans Plague / epidemiology Pandemics / history Metagenomics Genome, Bacterial Phylogeny
Trondheim Yersinia pestis pandemic genomics plague population genomics population replacement second plague pandemic selection

Journal

Current biology : CB
ISSN: 1879-0445
Titre abrégé: Curr Biol
Pays: England
ID NLM: 9107782

Informations de publication

Date de publication:
07 11 2022
Historique:
received: 07 06 2022
revised: 15 06 2022
accepted: 09 09 2022
pubmed: 2 10 2022
medline: 11 11 2022
entrez: 1 10 2022
Statut: ppublish

Résumé

Human populations have been shaped by catastrophes that may have left long-lasting signatures in their genomes. One notable example is the second plague pandemic that entered Europe in ca. 1,347 CE and repeatedly returned for over 300 years, with typical village and town mortality estimated at 10%-40%.

Identifiants

DOI: 10.1016/j.cub.2022.09.023 PMID: 36182700 PMC: PMC9671091
pubmed: 36182700
pii: S0960-9822(22)01467-1
doi: 10.1016/j.cub.2022.09.023
pmc: PMC9671091
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

4743-4751.e6

Informations de copyright

Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests The authors declare no competing interests.

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Auteurs

Shyam Gopalakrishnan (S)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark. Electronic address: shyam.gopalakrishnan@sund.ku.dk.

S Sunna Ebenesersdóttir (SS)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland; Department of Anthropology, School of Social Sciences, University of Iceland, Gimli, Sæmundargata, 102 Reykjavík, Iceland.

Inge K C Lundstrøm (IKC)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Gordon Turner-Walker (G)

National Yunlin University of Science & Technology, 123 University Road, Section 3, 64002 Douliu, Yun-Lin County, Taiwan; Department of Archaeology and Anthropology, National Museum of Natural Science, 1 Guanqian Road, North District Taichung City 404023, Taiwan.

Kristjan H S Moore (KHS)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland.

Pierre Luisi (P)

Facultad de Filosofía y Humanidades, Universidad Nacional de Córdoba, Córdoba, Argentina; Microbial Paleogenomics Unit, Institut Pasteur, 25-28 Rue du Dr Roux, 75015 Paris, France.

Ashot Margaryan (A)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Michael D Martin (MD)

NTNU University Museum, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway.

Martin Rene Ellegaard (MR)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; NTNU University Museum, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway.

Ólafur Þ Magnússon (ÓÞ)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland.

Ásgeir Sigurðsson (Á)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland.

Steinunn Snorradóttir (S)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland.

Droplaug N Magnúsdóttir (DN)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland.

Jason E Laffoon (JE)

Department of Archaeological Sciences, Faculty of Archaeology, Leiden University, Leiden, the Netherlands.

Lucy van Dorp (L)

UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK.

Xiaodong Liu (X)

Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark.

Ida Moltke (I)

Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark.

María C Ávila-Arcos (MC)

International Laboratory for Human Genome Research, Laboratorio Internacional de Investigación sobre el Genoma Humano (LIIGH), Universidad Nacional Autónoma de México (UNAM), 3001 Boulevard Juriquilla, 76230 Querétaro, Mexico.

Joshua G Schraiber (JG)

Illumina Artificial Intelligence Laboratory, Illumina Inc., San Diego, CA, USA.

Simon Rasmussen (S)

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen, Denmark.

David Juan (D)

Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003 Barcelona, Spain.

Pere Gelabert (P)

Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003 Barcelona, Spain; Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria.

Toni de-Dios (T)

Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003 Barcelona, Spain.

Anna K Fotakis (AK)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Miren Iraeta-Orbegozo (M)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Åshild J Vågene (ÅJ)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, 07745 Jena, Germany; Institute for Archaeological Sciences, University of Tübingen, Tübingen, Germany.

Sean Dexter Denham (SD)

Museum of Archaeology, University of Stavanger, Stavanger, Norway.

Axel Christophersen (A)

NTNU University Museum, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway.

Hans K Stenøien (HK)

NTNU University Museum, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway.

Filipe G Vieira (FG)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Shanlin Liu (S)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China.

Torsten Günther (T)

Evolutionsbiologisk Centrum EBC, Norbyv. 18A, 752 36 Uppsala, Sweden.

Toomas Kivisild (T)

KU Leuven, Herestraat 49, 3000 Leuven, Belgium; Institute of Genomics, University of Tartu, Riia 23b, 51010 Tartu, Estonia.

Ole Georg Moseng (OG)

Department of Business, History and Social Sciences, University of South-Eastern Norway, Notodden, Norway.

Birgitte Skar (B)

NTNU University Museum, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway.

Christina Cheung (C)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; EA - Eco-anthropologie (UMR 7206), Muséum National d'Histoire Naturelle, CNRS, Université Paris Diderot, Paris, France.

Marcela Sandoval-Velasco (M)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Nathan Wales (N)

Department of Archaeology, Kings Manor and Principals House, University of York, Exhibition Square, York YO1 7EP, UK.

Hannes Schroeder (H)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark.

Paula F Campos (PF)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; CIIMAR, Centro Interdisciplinar de Investigação Marinha e Ambiental, Universidade do Porto, Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, Matosinhos, Portugal.

Valdís B Guðmundsdóttir (VB)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland; Department of Anthropology, School of Social Sciences, University of Iceland, Gimli, Sæmundargata, 102 Reykjavík, Iceland.

Thomas Sicheritz-Ponten (T)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, Asian Institute of Medicine, Science and Technology (AIMST), 08100 Bedong, Kedah, Malaysia.

Bent Petersen (B)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, Asian Institute of Medicine, Science and Technology (AIMST), 08100 Bedong, Kedah, Malaysia.

Jostein Halgunset (J)

Biobank1, St. Olavs Hospital HF, Trondheim, Norway.

Edmund Gilbert (E)

School of Pharmacy and Biomolecular Sciences, RCSI, Dublin, Ireland; FutureNeuro SFI Research Centre, RCSI, Dublin, Ireland.

Gianpiero L Cavalleri (GL)

School of Pharmacy and Biomolecular Sciences, RCSI, Dublin, Ireland; FutureNeuro SFI Research Centre, RCSI, Dublin, Ireland.

Eivind Hovig (E)

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway; Center for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway.

Ingrid Kockum (I)

Center for Molecular Medicine, Department of Clinical Neuroscience, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden.

Tomas Olsson (T)

Center for Molecular Medicine, Department of Clinical Neuroscience, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden.

Lars Alfredsson (L)

Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.

Thomas F Hansen (TF)

Institute of Biological Psychiatry, Copenhagen Mental Health Services, Copenhagen, Denmark; Danish Headache Center, Department of Neurology, Copenhagen University Hospital, 2600 Glostrup, Denmark.

Thomas Werge (T)

Institute of Biological Psychiatry, Copenhagen Mental Health Services, Copenhagen, Denmark; Department of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark; The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Copenhagen, Denmark; The Globe Institute, Lundbeck Foundation Center for Geogenetics, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark.

Eske Willerslev (E)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK.

Francois Balloux (F)

UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK.

Tomas Marques-Bonet (T)

Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003 Barcelona, Spain; Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010 Barcelona, Spain; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain.

Carles Lalueza-Fox (C)

Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003 Barcelona, Spain; Museu de Ciències Naturals de Barcelona, 08019 Barcelona, Spain.

Rasmus Nielsen (R)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; Department of Integrative Biology, University of California, Berkeley, 3060 Valley Life Sciences Bldg #3140, Berkeley, CA 94720-3140, USA.

Kári Stefánsson (K)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland; Faculty of Medicine, University of Iceland, Reykjavík, Iceland.

Agnar Helgason (A)

deCODE Genetics, AMGEN Inc., Sturlugata 8, 102 Reykjavík, Iceland; Department of Anthropology, School of Social Sciences, University of Iceland, Gimli, Sæmundargata, 102 Reykjavík, Iceland.

M Thomas P Gilbert (MTP)

The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353 Copenhagen, Denmark; NTNU University Museum, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › The population genomic legacy of the second...
questionsmedicales.fr › Infection › Maladies vectorielles › Peste › The population genomic legacy of the second...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Épidémies de maladies › Épidémies › Pandémies › The population genomic legacy of the second...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Métagénomique › The population genomic legacy of the second...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › The population genomic legacy of the second...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › The population genomic legacy of the second...