Cryo-electron structures of the extreme thermostable enzymes Sulfur Oxygenase Reductase and Lumazine Synthase.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2022
Historique:
received: 22 05 2022
accepted: 18 09 2022
entrez: 3 10 2022
pubmed: 4 10 2022
medline: 6 10 2022
Statut: epublish

Résumé

Thermostable enzymes have the potential for use in a wide variety of biotechnological applications. Cryo-electron microscopy (cryo-EM) enables the imaging of biomolecules in their native aqueous environment. Here, we present high resolution cryo-EM structures of two thermostable enzymes that exhibit multimeric cage-like structures arranged into two different point-group symmetries. First, we determined the structure of the Sulfur Oxygenase Reductase (SOR) enzyme that catalyzes both the oxygenation and disproportionation of elemental sulfur in Archea and is composed of 24 homomeric units each of MW ≃ 35 kDa arranged in octahedral symmetry. The structure of SOR from Acidianus ambivalens (7X9W) was determined at 2.78 Å resolution. The active site of each subunit inside the central nanocompartment is composed of Fe3+ coordinated to two water molecules and the three amino acids (H86, H90 and E114). Second, we determined the structure of Lumazine Synthase (LS) from Aquifex aeolicus (7X7M) at 2.33 Å resolution. LS forms a cage-like structure consisting of 60 identical subunits each of MW ≃ 15 kDa arranged in a strict icosahedral symmetry. The LS subunits are interconnected by ion-pair network. Due to their thermostability and relatively easy purification scheme, both SOR and LS can serve as a model for the catalytic and structural characterization of biocatalysts as well as a benchmark for cryo-EM sample preparation, optimization of the acquisition parameters and 3D reconstruction.

Identifiants

pubmed: 36191023
doi: 10.1371/journal.pone.0275487
pii: PONE-D-22-14821
pmc: PMC9529111
doi:

Substances chimiques

Amino Acids 0
Multienzyme Complexes 0
Water 059QF0KO0R
Sulfur 70FD1KFU70
6,7-dimethyl-8-ribityllumazine synthase 89287-46-7
Oxidoreductases EC 1.-
Oxygenases EC 1.13.-

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0275487

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Mohamed A Sobhy (MA)

Bioscience Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Lingyun Zhao (L)

Electron Microscopy Core Labs, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Dalaver Anjum (D)

Electron Microscopy Core Labs, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Ali Behzad (A)

Electron Microscopy Core Labs, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Masateru Takahashi (M)

Bioscience Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Muhammad Tehseen (M)

Bioscience Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Alfredo De Biasio (A)

Bioscience Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Rachid Sougrat (R)

Electron Microscopy Core Labs, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Samir Hamdan (S)

Bioscience Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

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Classifications MeSH