Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
14 11 2022
Historique:
received: 16 05 2022
accepted: 01 08 2022
entrez: 14 11 2022
pubmed: 15 11 2022
medline: 18 11 2022
Statut: epublish

Résumé

Research can be more transparent and collaborative by using Findable, Accessible, Interoperable, and Reusable (FAIR) principles to publish Earth and environmental science data. Reporting formats-instructions, templates, and tools for consistently formatting data within a discipline-can help make data more accessible and reusable. However, the immense diversity of data types across Earth science disciplines makes development and adoption challenging. Here, we describe 11 community reporting formats for a diverse set of Earth science (meta)data including cross-domain metadata (dataset metadata, location metadata, sample metadata), file-formatting guidelines (file-level metadata, CSV files, terrestrial model data archiving), and domain-specific reporting formats for some biological, geochemical, and hydrological data (amplicon abundance tables, leaf-level gas exchange, soil respiration, water and sediment chemistry, sensor-based hydrologic measurements). More broadly, we provide guidelines that communities can use to create new (meta)data formats that integrate with their scientific workflows. Such reporting formats have the potential to accelerate scientific discovery and predictions by making it easier for data contributors to provide (meta)data that are more interoperable and reusable.

Identifiants

pubmed: 36376356
doi: 10.1038/s41597-022-01606-w
pii: 10.1038/s41597-022-01606-w
pmc: PMC9663825
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

700

Informations de copyright

© 2022. © Lawrence Berkeley National Laboratory.

Références

Nat Commun. 2021 Apr 7;12(1):2089
pubmed: 33828081
Nat Biotechnol. 2011 May;29(5):415-20
pubmed: 21552244
Sci Data. 2020 May 14;7(1):144
pubmed: 32409645
Glob Chang Biol. 2020 Jan;26(1):119-188
pubmed: 31891233
Nat Biotechnol. 2019 Apr;37(4):358-367
pubmed: 30940948
Trends Ecol Evol. 2019 Jun;34(6):494-496
pubmed: 31056219
PLoS One. 2020 Feb 27;15(2):e0229182
pubmed: 32106224
Environ Sci Technol. 2021 Feb 16;55(4):2452-2461
pubmed: 33529523
PLoS One. 2020 Mar 11;15(3):e0229003
pubmed: 32160189
PLoS Biol. 2018 Jul 26;16(7):e2006022
pubmed: 30048447
Nat Ecol Evol. 2017 May 23;1(6):160
pubmed: 28812630
Sci Data. 2020 Jul 9;7(1):225
pubmed: 32647314
PLoS Comput Biol. 2014 Apr 24;10(4):e1003542
pubmed: 24763340
Sci Data. 2016 Mar 15;3:160018
pubmed: 26978244
PLoS One. 2012;7(1):e29715
pubmed: 22238640
Earth Space Sci. 2022 Mar;9(3):e2021EA002119
pubmed: 35865637

Auteurs

Robert Crystal-Ornelas (R)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Github, San Francisco, CA, 94107, USA.

Charuleka Varadharajan (C)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. cvaradharajan@lbl.gov.

Dylan O'Ryan (D)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Environmental Studies Department, California State University, Sacramento, 6000 Jed Smith Dr, Sacramento, CA, 95819, USA.

Kathleen Beilsmith (K)

Argonne National Laboratory, Lemont, IL, 60439, USA.

Benjamin Bond-Lamberty (B)

Pacific Northwest National Laboratory, Joint Global Change Research Institute at the University of Maryland-College Park, College Park, MD, 20740, USA.

Kristin Boye (K)

Environmental Geochemistry Group, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.

Madison Burrus (M)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Shreyas Cholia (S)

Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Danielle S Christianson (DS)

Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Michael Crow (M)

Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA.

Joan Damerow (J)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Kim S Ely (KS)

Environmental and Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA.

Amy E Goldman (AE)

Pacific Northwest National Laboratory, Richland, WA, 99354, USA.

Susan L Heinz (SL)

Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA.

Valerie C Hendrix (VC)

Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Zarine Kakalia (Z)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Kayla Mathes (K)

Integrated Life Sciences, Virginia Commonwealth University, Richmond, VA, 23284, USA.

Fianna O'Brien (F)

Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Stephanie C Pennington (SC)

Pacific Northwest National Laboratory, Joint Global Change Research Institute at the University of Maryland-College Park, College Park, MD, 20740, USA.

Emily Robles (E)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Alistair Rogers (A)

Environmental and Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA.

Maegen Simmonds (M)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Pivot Bio, 2910 Seventh Street, Berkeley, CA, 94710, USA.

Terri Velliquette (T)

Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA.

Pamela Weisenhorn (P)

Argonne National Laboratory, Lemont, IL, 60439, USA.

Jessica Nicole Welch (JN)

Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA.

Karen Whitenack (K)

Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Deborah A Agarwal (DA)

Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

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Classifications MeSH