High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
24 11 2022
Historique:
received: 13 04 2022
accepted: 14 11 2022
entrez: 26 11 2022
pubmed: 27 11 2022
medline: 30 11 2022
Statut: epublish

Résumé

The Klebsiella jumbo myophage ϕKp24 displays an unusually complex arrangement of tail fibers interacting with a host cell. In this study, we combine cryo-electron microscopy methods, protein structure prediction methods, molecular simulations, microbiological and machine learning approaches to explore the capsid, tail, and tail fibers of ϕKp24. We determine the structure of the capsid and tail at 4.1 Å and 3.0 Å resolution. We observe the tail fibers are branched and rearranged dramatically upon cell surface attachment. This complex configuration involves fourteen putative tail fibers with depolymerase activity that provide ϕKp24 with the ability to infect a broad panel of capsular polysaccharide (CPS) types of Klebsiella pneumoniae. Our study provides structural and functional insight into how ϕKp24 adapts to the variable surfaces of capsulated bacterial pathogens, which is useful for the development of phage therapy approaches against pan-drug resistant K. pneumoniae strains.

Identifiants

pubmed: 36433970
doi: 10.1038/s41467-022-34972-5
pii: 10.1038/s41467-022-34972-5
pmc: PMC9700779
doi:

Substances chimiques

Capsid Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

7241

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom

Informations de copyright

© 2022. The Author(s).

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Auteurs

Ruochen Ouyang (R)

MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xianning West Road 28, Xi'an, 710049, China.
Department of Microbial Sciences, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.

Ana Rita Costa (AR)

Department of Bionanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
Kavli Institute of Nanoscience, Delft, The Netherlands.

C Keith Cassidy (CK)

Department of Biochemistry, University of Oxford, Oxford, UK.

Aleksandra Otwinowska (A)

Department of Pathogen Biology and Immunology, University of Wroclaw, Przybyszewskiego 63-77, 51-148, Wroclaw, Poland.

Vera C J Williams (VCJ)

Department of Microbial Sciences, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.

Agnieszka Latka (A)

Department of Pathogen Biology and Immunology, University of Wroclaw, Przybyszewskiego 63-77, 51-148, Wroclaw, Poland.
Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1, 9000, Ghent, Belgium.

Phill J Stansfeld (PJ)

School of Life Sciences & Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK.

Zuzanna Drulis-Kawa (Z)

Department of Pathogen Biology and Immunology, University of Wroclaw, Przybyszewskiego 63-77, 51-148, Wroclaw, Poland.

Yves Briers (Y)

Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1, 9000, Ghent, Belgium.

Daniël M Pelt (DM)

Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333CA, Leiden, The Netherlands.

Stan J J Brouns (SJJ)

Department of Bionanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
Kavli Institute of Nanoscience, Delft, The Netherlands.

Ariane Briegel (A)

Department of Microbial Sciences, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands. a.briegel@biology.leidenuniv.nl.

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Classifications MeSH