A machine learning approach using endpoint adjudication committee labels for the identification of sepsis predictors at the emergency department.

Electronic health records Emergency department Endpoint adjudication Machine learning Sepsis

Journal

BMC emergency medicine
ISSN: 1471-227X
Titre abrégé: BMC Emerg Med
Pays: England
ID NLM: 100968543

Informations de publication

Date de publication:
23 12 2022
Historique:
received: 01 08 2022
accepted: 06 12 2022
entrez: 22 12 2022
pubmed: 23 12 2022
medline: 27 12 2022
Statut: epublish

Résumé

Accurate sepsis diagnosis is paramount for treatment decisions, especially at the emergency department (ED). To improve diagnosis, clinical decision support (CDS) tools are being developed with machine learning (ML) algorithms, using a wide range of variable groups. ML models can find patterns in Electronic Health Record (EHR) data that are unseen by the human eye. A prerequisite for a good model is the use of high-quality labels. Sepsis gold-standard labels are hard to define due to a lack of reliable diagnostic tools for sepsis at the ED. Therefore, standard clinical tools, such as clinical prediction scores (e.g. modified early warning score and quick sequential organ failure assessment), and claims-based methods (e.g. ICD-10) are used to generate suboptimal labels. As a consequence, models trained with these "silver" labels result in ill-trained models. In this study, we trained ML models for sepsis diagnosis at the ED with labels of 375 ED visits assigned by an endpoint adjudication committee (EAC) that consisted of 18 independent experts. Our objective was to evaluate which routinely measured variables show diagnostic value for sepsis. We performed univariate testing and trained multiple ML models with 95 routinely measured variables of three variable groups; demographic and vital, laboratory and advanced haematological variables. Apart from known diagnostic variables, we identified added diagnostic value for less conventional variables such as eosinophil count and platelet distribution width. In this explorative study, we show that the use of an EAC together with ML can identify new targets for future sepsis diagnosis research.

Identifiants

pubmed: 36550392
doi: 10.1186/s12873-022-00764-9
pii: 10.1186/s12873-022-00764-9
pmc: PMC9784058
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

208

Informations de copyright

© 2022. The Author(s).

Références

Anaesthesia. 2003 Aug;58(8):797-802
pubmed: 12859475
Clin Chem Lab Med. 2007;45(1):13-9
pubmed: 17243908
J Am Med Dir Assoc. 2022 May;23(5):865-871.e2
pubmed: 34619118
JAMA. 2016 Feb 23;315(8):801-10
pubmed: 26903338
Korean J Pediatr. 2019 Jun;62(6):217-223
pubmed: 30304894
Medicine (Baltimore). 2015 Nov;94(45):e1992
pubmed: 26559287
Clin Microbiol Infect. 2022 Aug;28(8):1170-1171
pubmed: 35364274
BMC Emerg Med. 2019 Dec 3;19(1):76
pubmed: 31795936
Int J Lab Hematol. 2008 Dec;30(6):480-6
pubmed: 19062362
J Crit Care. 2014 Aug;29(4):523-7
pubmed: 24798344
Int J Lab Hematol. 2019 Jun;41(3):392-396
pubmed: 30806482
Expert Rev Mol Diagn. 2005 Mar;5(2):193-207
pubmed: 15833049
Psychosom Med. 2004 May-Jun;66(3):411-21
pubmed: 15184705
Crit Care Med. 2019 Aug;47(8):1018-1025
pubmed: 31107278
Anaesth Intensive Care. 1991 May;19(2):182-6
pubmed: 2069236
Intensive Care Med. 1996 Jul;22(7):707-10
pubmed: 8844239
Crit Care. 2008;12(2):R59
pubmed: 18435836
Acta Paediatr Scand. 1974 May;63(3):381-8
pubmed: 4209638
Front Immunol. 2018 Jun 28;9:1502
pubmed: 30002660
Intensive Care Med. 2018 Mar;44(3):311-322
pubmed: 29546535
PLoS Med. 2016 May 17;13(5):e1002022
pubmed: 27187803
Sci Rep. 2018 Aug 15;8(1):12233
pubmed: 30111827
Intensive Care Med. 2020 Mar;46(3):383-400
pubmed: 31965266
Intensive Care Med. 1998 Oct;24(10):1052-6
pubmed: 9840239
Sci Data. 2016 May 24;3:160035
pubmed: 27219127
Lab Hematol. 2006;12(1):15-31
pubmed: 16513543
Crit Care Med. 2013 Mar;41(3):820-32
pubmed: 23348516
JAMA. 2016 Feb 23;315(8):762-74
pubmed: 26903335
Electron J Stat. 2015;9(1):1583-1607
pubmed: 26279737
Health Technol Assess. 2007 Dec;11(50):iii, ix-51
pubmed: 18021577
J Clin Med. 2020 Mar 23;9(3):
pubmed: 32210033
J Chem Inf Comput Sci. 2004 Jan-Feb;44(1):1-12
pubmed: 14741005

Auteurs

Michael S A Niemantsverdriet (MSA)

Central Diagnostic Laboratory, University Medical Center Utrecht, Utrecht University, Room Number G03.551, Heidelberglaan 100, 3584 CX, Utrecht, The Netherlands.
SkylineDx, Rotterdam, The Netherlands.

Titus A P de Hond (TAP)

Department of Internal Medicine and Acute Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands.

Imo E Hoefer (IE)

Central Diagnostic Laboratory, University Medical Center Utrecht, Utrecht University, Room Number G03.551, Heidelberglaan 100, 3584 CX, Utrecht, The Netherlands.

Wouter W van Solinge (WW)

Central Diagnostic Laboratory, University Medical Center Utrecht, Utrecht University, Room Number G03.551, Heidelberglaan 100, 3584 CX, Utrecht, The Netherlands.

Domenico Bellomo (D)

SkylineDx, Rotterdam, The Netherlands.

Jan Jelrik Oosterheert (JJ)

Department of Internal Medicine, Infectious Diseases, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands.

Karin A H Kaasjager (KAH)

Department of Internal Medicine and Acute Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands.

Saskia Haitjema (S)

Central Diagnostic Laboratory, University Medical Center Utrecht, Utrecht University, Room Number G03.551, Heidelberglaan 100, 3584 CX, Utrecht, The Netherlands. s.haitjema@umcutrecht.nl.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH