The effect of various partial atomic charges on the bulk and liquid/vacuum interface properties of iodobenzene derivatives at their melting points.

Halogen-bonding Iodobenzene OPLS-AA Partial atomic charge Thermophysical properties σ-hole

Journal

Journal of molecular graphics & modelling
ISSN: 1873-4243
Titre abrégé: J Mol Graph Model
Pays: United States
ID NLM: 9716237

Informations de publication

Date de publication:
03 2023
Historique:
received: 29 09 2022
revised: 04 11 2022
accepted: 20 12 2022
pubmed: 1 1 2023
medline: 19 1 2023
entrez: 31 12 2022
Statut: ppublish

Résumé

In this work, various atomic charge schemes including natural bond orbital (NBO), electrostatic potential based (CHELPG), and σ-hole model charges were applied in the OPLS-AA force field to investigate their effects on the thermophysical and structural properties of iodobenzene and its derivatives. Molecular dynamics simulations presented in this work show that the studied structural and thermophysical properties are in good agreement with experiments when the CHELPG charge was coupled with the OPLS-AA force field. Also, the arrangement of iodobenzene derivatives in the liquid phase was investigated via combined radial/angular distribution functions (CDFs) analyses and halogen-bonding theory. The most probable orientation of iodobenzene derivatives at the liquid/vacuum interface was assigned by atom density profile and bivariate orientational distribution maps. For all studied iodobenzene derivatives, benzene rings are oriented such that the iodine atoms tend toward the vacuum phase.

Identifiants

pubmed: 36586348
pii: S1093-3263(22)00279-0
doi: 10.1016/j.jmgm.2022.108400
pii:
doi:

Substances chimiques

Halogens 0
iodobenzene 9HK5L7YBBR
Iodobenzenes 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

108400

Informations de copyright

Copyright © 2022 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Elham Sookhaki (E)

Department of Chemistry, Yazd University, Yazd, Iran; Department of Chemistry, Shiraz University, Shiraz, 71946-84795, Iran.

Amin Reza Zolghadr (AR)

Department of Chemistry, Shiraz University, Shiraz, 71946-84795, Iran. Electronic address: arzolghadr@shirazu.ac.ir.

Mansoor Namazian (M)

Department of Chemistry, Yazd University, Yazd, Iran.

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Classifications MeSH