A PREVENTIVE TOOL FOR PREDICTING BLOODSTREAM INFECTIONS IN CHILDREN WITH BURNS.


Journal

Shock (Augusta, Ga.)
ISSN: 1540-0514
Titre abrégé: Shock
Pays: United States
ID NLM: 9421564

Informations de publication

Date de publication:
01 03 2023
Historique:
pmc-release: 01 03 2024
pubmed: 5 1 2023
medline: 8 3 2023
entrez: 4 1 2023
Statut: ppublish

Résumé

Introduction: Despite significant advances in pediatric burn care, bloodstream infections (BSIs) remain a compelling challenge during recovery. A personalized medicine approach for accurate prediction of BSIs before they occur would contribute to prevention efforts and improve patient outcomes. Methods: We analyzed the blood transcriptome of severely burned (total burn surface area [TBSA] ≥20%) patients in the multicenter Inflammation and Host Response to Injury ("Glue Grant") cohort. Our study included 82 pediatric (aged <16 years) patients, with blood samples at least 3 days before the observed BSI episode. We applied the least absolute shrinkage and selection operator (LASSO) machine-learning algorithm to select a panel of biomarkers predictive of BSI outcome. Results: We developed a panel of 10 probe sets corresponding to six annotated genes ( ARG2 [ arginase 2 ], CPT1A [ carnitine palmitoyltransferase 1A ], FYB [ FYN binding protein ], ITCH [ itchy E3 ubiquitin protein ligase ], MACF1 [ microtubule actin crosslinking factor 1 ], and SSH2 [ slingshot protein phosphatase 2 ]), two uncharacterized ( LOC101928635 , LOC101929599 ), and two unannotated regions. Our multibiomarker panel model yielded highly accurate prediction (area under the receiver operating characteristic curve, 0.938; 95% confidence interval [CI], 0.881-0.981) compared with models with TBSA (0.708; 95% CI, 0.588-0.824) or TBSA and inhalation injury status (0.792; 95% CI, 0.676-0.892). A model combining the multibiomarker panel with TBSA and inhalation injury status further improved prediction (0.978; 95% CI, 0.941-1.000). Conclusions: The multibiomarker panel model yielded a highly accurate prediction of BSIs before their onset. Knowing patients' risk profile early will guide clinicians to take rapid preventive measures for limiting infections, promote antibiotic stewardship that may aid in alleviating the current antibiotic resistance crisis, shorten hospital length of stay and burden on health care resources, reduce health care costs, and significantly improve patients' outcomes. In addition, the biomarkers' identity and molecular functions may contribute to developing novel preventive interventions.

Identifiants

pubmed: 36597771
doi: 10.1097/SHK.0000000000002075
pii: 00024382-202303000-00010
pmc: PMC9991965
mid: NIHMS1858399
doi:

Types de publication

Multicenter Study Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

393-399

Subventions

Organisme : NIAID NIH HHS
ID : R56 AI155505
Pays : United States
Organisme : NIAID NIH HHS
ID : R03 AI151499
Pays : United States
Organisme : NIGMS NIH HHS
ID : U54 GM062119
Pays : United States

Informations de copyright

Copyright © 2023 by the Shock Society.

Déclaration de conflit d'intérêts

L.G.R. has a financial interest in Spero Therapeutics, a company developing therapies to treat bacterial infections. L.G.R.'s financial interests are reviewed and managed by Massachusetts General Hospital and Partners HealthCare in accordance with their conflict of interest policies. The other authors report no conflicts of interest.

Références

Alp E, Coruh A, Gunay GK, et al. Risk factors for nosocomial infection and mortality in burn patients: 10 years of experience at a university hospital. J Burn Care Res . 2012;33(3):379–385.
Pedrosa AF, Rodrigues AG. Candidemia in burn patients: figures and facts. J Trauma . 2011;70(2):498–506.
Barret JP, Herndon DN. Effects of burn wound excision on bacterial colonization and invasion. Plast Reconstr Surg . 2003;111(2):744–750; discussion 51–52.
Alexander JW. Mechanism of immunologic suppression in burn injury. J Trauma . 1990;30(12 Suppl):S70–S75.
Griswold JA. White blood cell response to burn injury. Semin Nephrol . 1993;13(4):409–415.
Hansbrough JF, Field TOJ, Gadd MA, et al. Immune response modulation after burn injury: T cells and antibodies. J Burn Care Rehabil . 1987;8(6):509–512.
Vincent JL, Rello J, Marshall J, et al. International study of the prevalence and outcomes of infection in intensive care units. JAMA . 2009;302(21):2323–2329.
Olaechea PM, Palomar M, Alvarez-Lerma F, et al. Morbidity and mortality associated with primary and catheter-related bloodstream infections in critically ill patients. Rev Esp Quimioter . 2013;26(1):21–29.
Prowle JR, Echeverri JE, Ligabo EV, et al. Acquired bloodstream infection in the intensive care unit: incidence and attributable mortality. Crit Care . 2011;15(2):R100.
Goto M, Al-Hasan MN. Overall burden of bloodstream infection and nosocomial bloodstream infection in North America and Europe. Clin Microbiol Infect . 2013;19(6):501–509.
Lin JC, Chen ZH, Chen XD. Elevated serum procalcitonin predicts gram-negative bloodstream infections in patients with burns. Burns . 2020;46(1):182–189.
Yan S, Tsurumi A, Que YA, et al. Prediction of multiple infections after severe burn trauma: a prospective cohort study. Ann Surg . 2015;261(4):781–792.
Tsurumi A, Flaherty PJ, Que YA, et al. Multi-biomarker prediction models for multiple infection episodes following blunt trauma. iScience . 2020;23(11):101659.
Silver GM, Klein MB, Herndon DN, et al. Standard operating procedures for the clinical management of patients enrolled in a prospective study of inflammation and the host response to thermal injury. J Burn Care Res . 2007;28(2):222–230.
Wu J, Irizarry RA. gcrma: background adjustment using sequence information. 2017; R Package Version 2.50.0 .
Kauffmann A, Gentleman R, Huber W. arrayQualityMetrics—a bioconductor package for quality assessment of microarray data. Bioinformatics . 2009;25(3):415–416.
Ritchie ME, Phipson B, Wu D, et al. LIMMA powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res . 2015;43(7):e47.
Friedman J, Hastie T, Tibshirani R. Regularization paths for generalized linear models via coordinate descent. J Stat Softw . 2010;33(1):1–22.
Robin X, Turck N, Hainard A, et al. pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics . 2011;12:77.
Kuhn M. Building predictive models in R using the caret package. J Stat Softw .2008;28(5).
Stevenson M, Nunes E, Heuer C, et al. epiR: Tools for the analysis of epidemiological data. 2020. Available at: https://CRANR-projectorg/package = epiR. Accessed November 3, 2021.
Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc . 2009;4(1):44–57.
Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res . 2003;13(11):2498–2504.
Mostafavi S, Ray D, Warde-Farley D, et al. GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol . 2008;9(suppl 1):S4.
Montojo J, Zuberi K, Rodriguez H, et al. GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics . 2010;26(22):2927–2928.
Tsurumi A, Que YA, Yan S, et al. Do standard burn mortality formulae work on a population of severely burned children and adults? Burns . 2015;41(5):935–945.
Dowling JK, Afzal R, Gearing LJ, et al. Mitochondrial arginase-2 is essential for IL-10 metabolic reprogramming of inflammatory macrophages. Nat Commun . 2021;12(1):1460.
Szondi DC, Wong JK, Vardy LA, et al. Arginase signalling as a key player in chronic wound pathophysiology and healing. Front Mol Biosci . 2021;8:773866.
Rodriguez PC, Ochoa AC, Al-Khami AA. Arginine metabolism in myeloid cells shapes innate and adaptive immunity. Front Immunol . 2017;8:93.
Martí I Líndez AA, Reith W. Arginine-dependent immune responses. Cell Mol Life Sci . 2021;78(13):5303–5324.
Everett J, Turner K, Cai Q, et al. Arginine is a critical substrate for the pathogenesis of Pseudomonas aeruginosa in burn wound infections. MBio . 2017;8(2).
Xu X, Gera N, Li H, et al. GPCR-mediated PLCbetagamma/PKCbeta/PKD signaling pathway regulates the cofilin phosphatase slingshot 2 in neutrophil chemotaxis. Mol Biol Cell . 2015;26(5):874–886.
Chen HJ, Lin CM, Lin CS, et al. The role of microtubule actin cross-linking factor 1 (MACF1) in the Wnt signaling pathway. Genes Dev . 2006;20(14):1933–1945.
Tseng PC, Kuo CF, Cheng MH, et al. HECT E3 ubiquitin ligase-regulated Txnip degradation facilitates TLR2-mediated inflammation during group a streptococcal infection. Front Immunol . 2019;10:2147.
Melino G, Gallagher E, Aqeilan RI, et al. Itch: a HECT-type E3 ligase regulating immunity, skin and cancer. Cell Death Differ . 2008;15(7):1103–1112.
Lee K, Kerner J, Hoppel CL. Mitochondrial carnitine palmitoyltransferase 1a (CPT1a) is part of an outer membrane fatty acid transfer complex. J Biol Chem . 2011;286(29):25655–25662.
Rufer AC, Thoma R, Hennig M. Structural insight into function and regulation of carnitine palmitoyltransferase. Cell Mol Life Sci . 2009;66(15):2489–2501.
Calle P, Munoz A, Sola A, et al. CPT1a gene expression reverses the inflammatory and anti-phagocytic effect of 7-ketocholesterol in RAW264.7 macrophages. Lipids Health Dis . 2019;18(1):215.
Hunter AJ, Ottoson N, Boerth N, et al. Cutting edge: a novel function for the SLAP-130/FYB adapter protein in beta 1 integrin signaling and T lymphocyte migration. J Immunol . 2000;164(3):1143–1147.
Peterson EJ, Woods ML, Dmowski SA, et al. Coupling of the TCR to integrin activation by Slap-130/Fyb. Science . 2001;293(5538):2263–2265.

Auteurs

Patrick J Flaherty (PJ)

Department of Mathematics and Statistics, University of Massachusetts at Amherst, Amherst, Massachusetts.

Yok-Ai Que (YA)

Department of Intensive Care Medicine, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.

Ankita Banerjee (A)

Department of Surgery, Massachusetts General Hospital, Boston, Massachusetts.

Malavika Shankar (M)

Department of Surgery, Massachusetts General Hospital, Boston, Massachusetts.

Ronald G Tompkins (RG)

Department of Surgery, Massachusetts General Hospital, Boston, Massachusetts.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH