Neonatal imprinting of alveolar macrophages via neutrophil-derived 12-HETE.
Animals
Mice
12-Hydroxy-5,8,10,14-eicosatetraenoic Acid
/ metabolism
Acute Lung Injury
Animals, Newborn
Arachidonate 12-Lipoxygenase
/ deficiency
Arachidonate 15-Lipoxygenase
/ deficiency
Cell Self Renewal
COVID-19
Influenza A virus
Lipopolysaccharides
Lung
/ cytology
Macrophages, Alveolar
/ cytology
Neutrophils
/ metabolism
Orthomyxoviridae Infections
Prostaglandins E
SARS-CoV-2
Disease Susceptibility
Journal
Nature
ISSN: 1476-4687
Titre abrégé: Nature
Pays: England
ID NLM: 0410462
Informations de publication
Date de publication:
02 2023
02 2023
Historique:
received:
15
07
2021
accepted:
14
12
2022
pubmed:
5
1
2023
medline:
18
2
2023
entrez:
4
1
2023
Statut:
ppublish
Résumé
Resident-tissue macrophages (RTMs) arise from embryonic precursors
Identifiants
pubmed: 36599368
doi: 10.1038/s41586-022-05660-7
pii: 10.1038/s41586-022-05660-7
pmc: PMC9945843
doi:
Substances chimiques
12-Hydroxy-5,8,10,14-eicosatetraenoic Acid
59985-28-3
Alox15 protein, mouse
EC 1.13.11.31
Arachidonate 12-Lipoxygenase
EC 1.13.11.31
Arachidonate 15-Lipoxygenase
EC 1.13.11.33
Lipopolysaccharides
0
Prostaglandins E
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
530-538Subventions
Organisme : NIGMS NIH HHS
ID : T32 GM007281
Pays : United States
Informations de copyright
© 2023. The Author(s).
Références
Schneider, C. et al. Induction of the nuclear receptor PPAR-γ by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages. Nat. Immunol. 15, 1026–1037 (2014).
pubmed: 25263125
doi: 10.1038/ni.3005
Guilliams, M. et al. Alveolar macrophages develop from fetal monocytes that differentiate into long-lived cells in the first week of life via GM-CSF. J. Exp. Med. 210, 1977–1992 (2013).
pubmed: 24043763
pmcid: 3782041
doi: 10.1084/jem.20131199
Hussell, T. & Bell, T. J. Alveolar macrophages: plasticity in a tissue-specific context. Nat. Rev. Immunol. 14, 81–93 (2014).
pubmed: 24445666
doi: 10.1038/nri3600
Sabatel, C. et al. Exposure to bacterial CpG DNA protects from airway allergic inflammation by expanding regulatory lung interstitial macrophages. Immunity 46, 457–473 (2017).
pubmed: 28329706
doi: 10.1016/j.immuni.2017.02.016
Gibbings, S. L. et al. Three unique interstitial macrophages in the murine lung at steady state. Am. J. Respir. Cell Mol. Biol. 57, 66–76 (2017).
pubmed: 28257233
pmcid: 5516280
doi: 10.1165/rcmb.2016-0361OC
Schyns, J. et al. Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the mouse lung. Nat. Commun. 10, 3964 (2019).
pubmed: 31481690
pmcid: 6722135
doi: 10.1038/s41467-019-11843-0
Chakarov, S. et al. Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches. Science 363, eaau0964 (2019).
pubmed: 30872492
doi: 10.1126/science.aau0964
Kawasaki, T., Ito, K., Miyata, H., Akira, S. & Kawai, T. Deletion of PIKfyve alters alveolar macrophage populations and exacerbates allergic inflammation in mice. EMBO J. 36, 1707–1718 (2017).
pubmed: 28533230
pmcid: 5470042
doi: 10.15252/embj.201695528
Yu, X. et al. The cytokine TGF-β promotes the development and homeostasis of alveolar macrophages. Immunity 47, 903–912.e4 (2017).
pubmed: 29126797
doi: 10.1016/j.immuni.2017.10.007
Hashimoto, D. et al. Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes. Immunity 38, 792–804 (2013).
pubmed: 23601688
doi: 10.1016/j.immuni.2013.04.004
Suzuki, T. et al. Pulmonary macrophage transplantation therapy. Nature 514, 450–454 (2014).
pubmed: 25274301
pmcid: 4236859
doi: 10.1038/nature13807
Dennis, E. A. & Norris, P. C. Eicosanoid storm in infection and inflammation. Nat. Rev. Immunol. 15, 511–523 (2015).
pubmed: 26139350
pmcid: 4606863
doi: 10.1038/nri3859
Pernet, E., Downey, J., Vinh, D. C., Powell, W. S. & Divangahi, M. Leukotriene B4-type I interferon axis regulates macrophage-mediated disease tolerance to influenza infection. Nat. Microbiol. 4, 1389–1400 (2019).
pubmed: 31110361
doi: 10.1038/s41564-019-0444-3
Coulombe, F. et al. Targeted prostaglandin E2 inhibition enhances antiviral immunity through induction of type I interferon and apoptosis in macrophages. Immunity 40, 554–568 (2014).
pubmed: 24726877
doi: 10.1016/j.immuni.2014.02.013
Divangahi, M. et al. Mycobacterium tuberculosis evades macrophage defenses by inhibiting plasma membrane repair. Nat. Immunol. 10, 899–906 (2009).
pubmed: 19561612
pmcid: 2730354
doi: 10.1038/ni.1758
Serezani, C. H., Lewis, C., Jancar, S. & Peters-Golden, M. Leukotriene B4 amplifies NF-κB activation in mouse macrophages by reducing SOCS1 inhibition of MyD88 expression. J. Clin. Invest. 121, 671–682 (2011).
pubmed: 21206089
pmcid: 3026722
doi: 10.1172/JCI43302
Lee, S. P., Serezani, C. H., Medeiros, A. I., Ballinger, M. N. & Peters-Golden, M. Crosstalk between prostaglandin E2 and leukotriene B4 regulates phagocytosis in alveolar macrophages via combinatorial effects on cyclic AMP. J. Immunol. 182, 530–537 (2009).
pubmed: 19109185
doi: 10.4049/jimmunol.182.1.530
Morita, M. et al. The lipid mediator protectin D1 inhibits influenza virus replication and improves severe influenza. Cell 153, 112–125 (2013).
pubmed: 23477864
doi: 10.1016/j.cell.2013.02.027
Coulombe, F. & Divangahi, M. Targeting eicosanoid pathways in the development of novel anti-influenza drugs. Exp. Rev. Anti Infect. Ther. 12, 1337–1343 (2014).
doi: 10.1586/14787210.2014.966082
Divangahi, M., Desjardins, D., Nunes-Alves, C., Remold, H. G. & Behar, S. M. Eicosanoid pathways regulate adaptive immunity to Mycobacterium tuberculosis. Nat. Immunol. 11, 751–758 (2010).
pubmed: 20622882
pmcid: 3150169
doi: 10.1038/ni.1904
Schneider, C. et al. Alveolar macrophages are essential for protection from respiratory failure and associated morbidity following influenza virus infection. PLoS Pathog. 10, e1004053 (2014).
pubmed: 24699679
pmcid: 3974877
doi: 10.1371/journal.ppat.1004053
Hernandez-Segura, A., Nehme, J. & Demaria, M. Hallmarks of cellular senescence. Trends Cell Biol. 28, 436–453 (2018).
pubmed: 29477613
doi: 10.1016/j.tcb.2018.02.001
Coppe, J. P., Desprez, P. Y., Krtolica, A. & Campisi, J. The senescence-associated secretory phenotype: the dark side of tumor suppression. Annu. Rev. Pathol. 5, 99–118 (2010).
pubmed: 20078217
pmcid: 4166495
doi: 10.1146/annurev-pathol-121808-102144
Yu, Q. et al. DNA-damage-induced type I interferon promotes senescence and inhibits stem cell function. Cell Rep. 11, 785–797 (2015).
pubmed: 25921537
pmcid: 4426031
doi: 10.1016/j.celrep.2015.03.069
Gluck, S. et al. Innate immune sensing of cytosolic chromatin fragments through cGAS promotes senescence. Nat. Cell Biol. 19, 1061–1070 (2017).
pubmed: 28759028
pmcid: 5826565
doi: 10.1038/ncb3586
Huang, N. N., Wang, D. J. & Heppel, L. A. Stimulation of aged human lung fibroblasts by extracellular ATP via suppression of arachidonate metabolism. J. Biol. Chem. 268, 10789–10795 (1993).
pubmed: 8388375
doi: 10.1016/S0021-9258(18)82054-3
Penke, L. R. et al. PGE
pubmed: 32820026
pmcid: 7441521
doi: 10.26508/lsa.202000800
Dagouassat, M. et al. The cyclooxygenase-2-prostaglandin E2 pathway maintains senescence of chronic obstructive pulmonary disease fibroblasts. Am. J. Respir. Crit. Care Med. 187, 703–714 (2013).
pubmed: 23328527
doi: 10.1164/rccm.201208-1361OC
Lee, E. K. S. et al. Leukotriene B4-mediated neutrophil recruitment causes pulmonary capillaritis during lethal fungal sepsis. Cell Host Microbe 23, 121–133.e4 (2018).
pubmed: 29290576
doi: 10.1016/j.chom.2017.11.009
Zarbock, A. et al. Improved survival and reduced vascular permeability by eliminating or blocking 12/15-lipoxygenase in mouse models of acute lung injury (ALI). J. Immunol. 183, 4715–4722 (2009).
pubmed: 19752233
doi: 10.4049/jimmunol.0802592
Cohen, M. et al. Lung single-cell signaling interaction map reveals basophil role in macrophage imprinting. Cell 175, 1031–1044.e18 (2018).
pubmed: 30318149
doi: 10.1016/j.cell.2018.09.009
Guo, Y. et al. Identification of the orphan G protein-coupled receptor GPR31 as a receptor for 12-(S)-hydroxyeicosatetraenoic acid. J. Biol. Chem. 286, 33832–33840 (2011).
pubmed: 21712392
pmcid: 3190773
doi: 10.1074/jbc.M110.216564
Yokomizo, T., Kato, K., Hagiya, H., Izumi, T. & Shimizu, T. Hydroxyeicosanoids bind to and activate the low affinity leukotriene B4 receptor, BLT2. J. Biol. Chem. 276, 12454–12459 (2001).
pubmed: 11278893
doi: 10.1074/jbc.M011361200
McQuattie-Pimentel, A. C. et al. The lung microenvironment shapes a dysfunctional response of alveolar macrophages in aging. J. Clin. Invest. 131, e140299 (2021).
pubmed: 33586677
pmcid: 7919859
doi: 10.1172/JCI140299
Wong, C. K. et al. Aging impairs alveolar macrophage phagocytosis and increases influenza-induced mortality in mice. J. Immunol. 199, 1060–1068 (2017).
pubmed: 28646038
doi: 10.4049/jimmunol.1700397
Zhang, D. et al. Neutrophil ageing is regulated by the microbiome. Nature 525, 528–532 (2015).
pubmed: 26374999
pmcid: 4712631
doi: 10.1038/nature15367
Gaush, C. R. & Smith, T. F. Replication and plaque assay of influenza virus in an established line of canine kidney cells. Appl. Microbiol. 16, 588–594 (1968).
pubmed: 5647517
pmcid: 547475
doi: 10.1128/am.16.4.588-594.1968
Kaufmann, E. et al. BCG educates hematopoietic stem cells to generate protective innate immunity against tuberculosis. Cell 172, 176–190.e19 (2018).
pubmed: 29328912
doi: 10.1016/j.cell.2017.12.031
Kim, D., Paggi, J. M., Park, C., Bennett, C. & Salzberg, S. L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat. Biotechnol. 37, 907–915 (2019).
pubmed: 31375807
pmcid: 7605509
doi: 10.1038/s41587-019-0201-4
Anders, S., Pyl, P. T. & Huber, W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166–169 (2015).
pubmed: 25260700
doi: 10.1093/bioinformatics/btu638
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
pubmed: 25516281
pmcid: 4302049
doi: 10.1186/s13059-014-0550-8
Kanehisa, M., Furumichi, M., Sato, Y., Ishiguro-Watanabe, M. & Tanabe, M. KEGG: integrating viruses and cellular organisms. Nucleic Acids Res. 49, D545–D551 (2021).
pubmed: 33125081
doi: 10.1093/nar/gkaa970
Zheng, G. X. et al. Massively parallel digital transcriptional profiling of single cells. Nat. Commun. 8, 14049 (2017).
pubmed: 28091601
pmcid: 5241818
doi: 10.1038/ncomms14049
Hafemeister, C. & Satija, R. Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression. Genome Biol. 20, 296 (2019).
pubmed: 31870423
pmcid: 6927181
doi: 10.1186/s13059-019-1874-1
Franzen, O., Gan, L. M. & Bjorkegren, J. L. M. PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data. Database (Oxford) 2019, baz046 (2019).
pubmed: 30951143
doi: 10.1093/database/baz046
Xie, X. et al. Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection. Nat. Immunol. 21, 1119–1133 (2020).
pubmed: 32719519
pmcid: 7442692
doi: 10.1038/s41590-020-0736-z
Dann, E., Henderson, N. C., Teichmann, S. A., Morgan, M. D. & Marioni, J. C. Differential abundance testing on single-cell data using k-nearest neighbor graphs. Nat. Biotechnol. 40, 245–253 (2022).
Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
pubmed: 18798982
pmcid: 2592715
doi: 10.1186/gb-2008-9-9-r137
Downey, J. et al. RIPK3 interacts with MAVS to regulate type I IFN-mediated immunity to influenza A virus infection. PLoS Pathog. 13, e1006326 (2017).
pubmed: 28410401
pmcid: 5406035
doi: 10.1371/journal.ppat.1006326
Cortal, A., Martignetti, L., Six, E. & Rausell, A. Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID. Nat. Biotechnol. 39, 1095–1102 (2021).
pubmed: 33927417
doi: 10.1038/s41587-021-00896-6