Evolutionary dynamics and adaptive benefits of deleterious mutations in crop gene pools.

HapMaps crop improvement deleterious variants genome editing genomic prediction mating system propagation selective sweeps wild relatives

Journal

Trends in plant science
ISSN: 1878-4372
Titre abrégé: Trends Plant Sci
Pays: England
ID NLM: 9890299

Informations de publication

Date de publication:
06 2023
Historique:
received: 11 03 2022
revised: 03 12 2022
accepted: 18 01 2023
medline: 15 5 2023
pubmed: 11 2 2023
entrez: 10 2 2023
Statut: ppublish

Résumé

Mutations with deleterious consequences in nature may be conditionally deleterious in crop plants. That is, while some genetic variants may reduce fitness under wild conditions and be subject to purifying selection, they can be under positive selection in domesticates. Such deleterious alleles can be plant breeding targets, particularly for complex traits. The difficulty of distinguishing favorable from unfavorable variants reduces the power of selection, while favorable trait variation and heterosis may be attributable to deleterious alleles. Here, we review the roles of deleterious mutations in crop breeding and discuss how they can be used as a new avenue for crop improvement with emerging genomic tools, including HapMaps and pangenome analysis, aiding the identification, removal, or exploitation of deleterious mutations.

Identifiants

pubmed: 36764870
pii: S1360-1385(23)00025-0
doi: 10.1016/j.tplants.2023.01.006
pii:
doi:

Types de publication

Journal Article Review Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

685-697

Informations de copyright

Copyright © 2023 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests No interests are declared.

Auteurs

Sangam L Dwivedi (SL)

Independent Researcher, Hyderabad, 500016, India.

Pat Heslop-Harrison (P)

Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Department of Genetics and Genome Biology, University of Leicester, Leicester, LE1 7RH, UK.

Charles Spillane (C)

Agriculture and Bioeconomy Research Centre, Ryan Institute, University of Galway, University Road, Galway, H91 REW4, Ireland.

Peter C McKeown (PC)

Agriculture and Bioeconomy Research Centre, Ryan Institute, University of Galway, University Road, Galway, H91 REW4, Ireland.

David Edwards (D)

School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA 6009, Australia.

Irwin Goldman (I)

Department of Horticulture, College of Agricultural and Life Sciences, University of Wisconsin Madison, WI 53706, USA.

Rodomiro Ortiz (R)

Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, SE 23053, Sweden. Electronic address: rodomiro.ortiz@slu.se.

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Classifications MeSH