Diatom DNA metabarcoding to assess the effect of natural radioactivity in mineral springs on ASV of benthic diatom communities.

Diatom diversity Genetic variants Metabarcoding Mineral springs Naturally occurring radioactivity rbcL

Journal

The Science of the total environment
ISSN: 1879-1026
Titre abrégé: Sci Total Environ
Pays: Netherlands
ID NLM: 0330500

Informations de publication

Date de publication:
15 May 2023
Historique:
received: 22 09 2022
revised: 16 12 2022
accepted: 12 02 2023
medline: 28 3 2023
pubmed: 22 2 2023
entrez: 21 2 2023
Statut: ppublish

Résumé

Little is still known about the low dose effects of radiation on the microbial communities in the environment. Mineral springs are ecosystems than can be affected by natural radioactivity. These extreme environments are, therefore, observatories for studying the influence of chronic radioactivity on the natural biota. In these ecosystems we find diatoms, unicellular microalgae, playing an essential role in the food chain. The present study aimed to investigate, using DNA metabarcoding, the effect of natural radioactivity in two environmental compartments (i.e. spring sediments and water) on the genetic richness, diversity and structure of diatom communities in 16 mineral springs in the Massif Central, France. Diatom biofilms were collected during October 2019, and a 312 bp region of the chloroplast gene rbcL (coding for the Ribulose Bisphosphate Carboxylase) used as a barcode for taxonomic assignation. A total of 565 amplicon sequence variants (ASV) were found. The dominant ASV were associated with Navicula sanctamargaritae, Gedaniella sp., Planothidium frequentissimum, Navicula veneta, Diploneis vacillans, Amphora copulata, Pinnularia brebissonii, Halamphora coffeaeformis, Gomphonema saprophilum, and Nitzschia vitrea, but some of the ASVs could not be assigned at the species level. Pearson correlation failed to show a correlation between ASV' richness and radioactivity parameters. Non-parametric MANOVA analysis based on ASVs occurrence or abundances revealed that geographical location was the main factor influencing ASVs distribution. Interestingly,

Identifiants

pubmed: 36801401
pii: S0048-9697(23)00886-0
doi: 10.1016/j.scitotenv.2023.162270
pii:
doi:

Substances chimiques

Minerals 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

162270

Informations de copyright

Copyright © 2023 Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Lory-Anne Baker (LA)

Université Clermont Auvergne, CNRS, LMGE, F-63000 Clermont-Ferrand, France; Université Clermont Auvergne, CNRS, GEOLAB, F-63000 Clermont-Ferrand, France; LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France. Electronic address: l-anne.baker@doctorant.uca.fr.

Aude Beauger (A)

Université Clermont Auvergne, CNRS, GEOLAB, F-63000 Clermont-Ferrand, France; LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France.

Sofia Kolovi (S)

LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France; Université Clermont Auvergne, CNRS/IN2P3, Laboratoire de Physique de Clermont (LPC), UMR 6533, F-63178 Aubière Cedex, France.

Olivier Voldoire (O)

Université Clermont Auvergne, CNRS, GEOLAB, F-63000 Clermont-Ferrand, France; LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France.

Elisabeth Allain (E)

Université Clermont Auvergne, CNRS, GEOLAB, F-63000 Clermont-Ferrand, France; LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France.

Vincent Breton (V)

LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France; Université Clermont Auvergne, CNRS/IN2P3, Laboratoire de Physique de Clermont (LPC), UMR 6533, F-63178 Aubière Cedex, France.

Patrick Chardon (P)

LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France; Université Clermont Auvergne, CNRS/IN2P3, Laboratoire de Physique de Clermont (LPC), UMR 6533, F-63178 Aubière Cedex, France.

Didier Miallier (D)

Université Clermont Auvergne, CNRS/IN2P3, Laboratoire de Physique de Clermont (LPC), UMR 6533, F-63178 Aubière Cedex, France.

Céline Bailly (C)

Laboratoire SUBATECH, UMR 6457, IN2P3/CNRS/IMT Atlantique, Université de Nantes, 4, rue Alfred Kastler, BP 20722, 44307 Nantes Cedex 3, France.

Gilles Montavon (G)

LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France; Laboratoire SUBATECH, UMR 6457, IN2P3/CNRS/IMT Atlantique, Université de Nantes, 4, rue Alfred Kastler, BP 20722, 44307 Nantes Cedex 3, France.

Agnès Bouchez (A)

Université Savoie Mont-Blanc, INRAE, UMR CARRTEL, 75 bis avenue de Corzent, FR-74200 Thonon-les-Bains, France.

Frédéric Rimet (F)

Université Savoie Mont-Blanc, INRAE, UMR CARRTEL, 75 bis avenue de Corzent, FR-74200 Thonon-les-Bains, France.

Cécile Chardon (C)

Université Savoie Mont-Blanc, INRAE, UMR CARRTEL, 75 bis avenue de Corzent, FR-74200 Thonon-les-Bains, France.

Valentin Vasselon (V)

Science-Management Interface for Biodiversity Conservation (SCIMABIO Interface),74200 Thonon-les-Bains, France.

Luc Ector (L)

Luxembourg Institute of Science and Technology (LIST), Department Environmental Research and Innovation (ERIN), Observatory for Climate, Environment and Biodiversity (OCEB), 4422 Belvaux, Luxembourg.

Carlos E Wetzel (CE)

Luxembourg Institute of Science and Technology (LIST), Department Environmental Research and Innovation (ERIN), Observatory for Climate, Environment and Biodiversity (OCEB), 4422 Belvaux, Luxembourg.

David G Biron (DG)

Université Clermont Auvergne, CNRS, LMGE, F-63000 Clermont-Ferrand, France; LTSER "Zone Atelier Territoires Uranifères", Clermont-Ferrand, France.

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