Computer-Assisted Diagnosis of Lymph Node Metastases in Colorectal Cancers Using Transfer Learning With an Ensemble Model.


Journal

Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc
ISSN: 1530-0285
Titre abrégé: Mod Pathol
Pays: United States
ID NLM: 8806605

Informations de publication

Date de publication:
05 2023
Historique:
received: 27 10 2022
revised: 14 12 2022
accepted: 21 01 2023
medline: 22 5 2023
pubmed: 23 2 2023
entrez: 22 2 2023
Statut: ppublish

Résumé

Screening of lymph node metastases in colorectal cancer (CRC) can be a cumbersome task, but it is amenable to artificial intelligence (AI)-assisted diagnostic solution. Here, we propose a deep learning-based workflow for the evaluation of CRC lymph node metastases from digitized hematoxylin and eosin-stained sections. A segmentation model was trained on 100 whole-slide images (WSIs). It achieved a Matthews correlation coefficient of 0.86 (±0.154) and an acceptable Hausdorff distance of 135.59 μm (±72.14 μm), indicating a high congruence with the ground truth. For metastasis detection, 2 models (Xception and Vision Transformer) were independently trained first on a patch-based breast cancer lymph node data set and were then fine-tuned using the CRC data set. After fine-tuning, the ensemble model showed significant improvements in the F1 score (0.797-0.949; P <.00001) and the area under the receiver operating characteristic curve (0.959-0.978; P <.00001). Four independent cohorts (3 internal and 1 external) of CRC lymph nodes were used for validation in cascading segmentation and metastasis detection models. Our approach showed excellent performance, with high sensitivity (0.995, 1.0) and specificity (0.967, 1.0) in 2 validation cohorts of adenocarcinoma cases (n = 3836 slides) when comparing slide-level labels with the ground truth (pathologist reports). Similarly, an acceptable performance was achieved in a validation cohort (n = 172 slides) with mucinous and signet-ring cell histology (sensitivity, 0.872; specificity, 0.936). The patch-based classification confidence was aggregated to overlay the potential metastatic regions within each lymph node slide for visualization. We also applied our method to a consecutive case series of lymph nodes obtained over the past 6 months at our institution (n = 217 slides). The overlays of prediction within lymph node regions matched 100% when compared with a microscope evaluation by an expert pathologist. Our results provide the basis for a computer-assisted diagnostic tool for easy and efficient lymph node screening in patients with CRC.

Identifiants

pubmed: 36805793
pii: S0893-3952(23)00023-6
doi: 10.1016/j.modpat.2023.100118
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

100118

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.

Auteurs

Amjad Khan (A)

Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland.

Nelleke Brouwer (N)

Department of Pathology, Radboud University Medical Centre, Netherlands.

Annika Blank (A)

Institute of Pathology, City Hospital Triemli, Zürich, Switzerland.

Felix Müller (F)

Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland.

Davide Soldini (D)

Institute of Clinical Pathology Medica, Zürich, Switzerland.

Aurelia Noske (A)

Institute of Clinical Pathology Medica, Zürich, Switzerland; Institute of Pathology, School of Medicine, Technical University of Munich, Munich, Germany.

Elisabeth Gaus (E)

Institute of Clinical Pathology Medica, Zürich, Switzerland.

Simone Brandt (S)

Institute of Clinical Pathology Medica, Zürich, Switzerland.

Iris Nagtegaal (I)

Department of Pathology, Radboud University Medical Centre, Netherlands.

Heather Dawson (H)

Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland.

Jean-Philippe Thiran (JP)

Department of Radiology, Lausanne University Hospital, Lausanne University and Centre d'Imagerie Biomédicale, Lausanne, Switzerland; Swiss Federal Institute of Technology Lausanne, Signal Processing Laboratory, Lausanne, Switzerland.

Aurel Perren (A)

Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland.

Alessandro Lugli (A)

Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland.

Inti Zlobec (I)

Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland. Electronic address: inti.zlobec@unibe.ch.

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