Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
Journal
bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187
Informations de publication
Date de publication:
22 Feb 2023
22 Feb 2023
Historique:
pubmed:
4
3
2023
medline:
4
3
2023
entrez:
3
3
2023
Statut:
epublish
Résumé
As a step towards simplifying and reducing the cost of haplotype resolved
Identifiants
pubmed: 36865218
doi: 10.1101/2023.02.21.529152
pmc: PMC9980101
pii:
doi:
Types de publication
Preprint
Langues
eng
Subventions
Organisme : NHGRI NIH HHS
ID : U01 HG010961
Pays : United States
Organisme : NHLBI NIH HHS
ID : OT3 HL142481
Pays : United States
Organisme : NIH HHS
ID : OT2 OD033761
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG011274
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG010262
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG011853
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG010485
Pays : United States
Références
Science. 2009 Oct 9;326(5950):289-93
pubmed: 19815776
Genome Res. 2017 May;27(5):801-812
pubmed: 27940952
Wellcome Open Res. 2023 Apr 27;8:189
pubmed: 37840885
Genome Biol. 2019 Jun 3;20(1):116
pubmed: 31159868
Nat Commun. 2017 Nov 3;8(1):1293
pubmed: 29101320
Genome Biol. 2021 Oct 27;22(1):299
pubmed: 34706745
J Comput Biol. 2015 Jun;22(6):498-509
pubmed: 25658651
Front Genet. 2020 May 19;11:493
pubmed: 32508881
Genetics. 2017 Jan;205(1):385-395
pubmed: 28049708
Nat Biotechnol. 2019 Oct;37(10):1155-1162
pubmed: 31406327
PLoS Genet. 2019 Jul 26;15(7):e1008302
pubmed: 31348818
Bioinformatics. 2021 Jan 29;36(21):5139-5144
pubmed: 33040146
Sci Data. 2016 Jun 07;3:160025
pubmed: 27271295
Cell. 2022 May 26;185(11):1986-2005.e26
pubmed: 35525246
Methods Mol Biol. 2023;2590:183-200
pubmed: 36335500
J Child Neurol. 2016 Aug;31(9):1127-37
pubmed: 27095821
Bioinformatics. 2015 Oct 15;31(20):3350-2
pubmed: 26099265
Bioinformatics. 2017 Sep 01;33(17):2759-2761
pubmed: 28472236
Cell. 2022 Sep 1;185(18):3426-3440.e19
pubmed: 36055201
Nat Biotechnol. 2020 Nov;38(11):1347-1355
pubmed: 32541955
Nat Biotechnol. 2023 Oct;41(10):1474-1482
pubmed: 36797493
Bioinformatics. 2021 Apr 1;36(22-23):5519-5521
pubmed: 33346817
Nature. 2022 Apr;604(7906):437-446
pubmed: 35444317
Nat Commun. 2020 Sep 22;11(1):4794
pubmed: 32963235
Nat Biotechnol. 2018 Oct 22;:
pubmed: 30346939
Nat Biotechnol. 2020 Sep;38(9):1044-1053
pubmed: 32686750
Genome Biol. 2022 Dec 27;23(1):271
pubmed: 36575487
Nat Biotechnol. 2022 Oct;40(10):1488-1499
pubmed: 35637420
Nat Biotechnol. 2013 Dec;31(12):1111-8
pubmed: 24185094
Nat Methods. 2021 Feb;18(2):170-175
pubmed: 33526886
Nat Rev Genet. 2010 Jul;11(7):499-511
pubmed: 20517342
G3 (Bethesda). 2015 Mar 17;5(5):931-41
pubmed: 25787242
Nat Biotechnol. 2016 May 6;34(5):518-24
pubmed: 27153285
Genome Biol. 2022 Mar 25;23(1):84
pubmed: 35337367
Nat Methods. 2023 Oct;20(10):1483-1492
pubmed: 37710018
Circulation. 2006 Nov 7;114(19):2026-33
pubmed: 17075016
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
Cell. 2019 Oct 17;179(3):589-603
pubmed: 31607513
Nat Methods. 2018 Aug;15(8):595-597
pubmed: 30013044