Sergey Koren

Affiliations

National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

Publications (12)

Weighted minimizer sampling improves long read mapping.

Bioinformatics (Oxford, England)

Avec: Chirag Jain , Arang Rhie , Haowen Zhang , Claudia Chu , Brian P Walenz , Sergey Koren , Adam M Phillippy

An improved pig reference genome sequence to enable pig genetics and genomics research.

GigaScience

Avec: Amanda Warr , Nabeel Affara , Bronwen Aken , Hamid Beiki , Derek M Bickhart , Konstantinos Billis , William Chow , Lel Eory , Heather A Finlayson , Paul Flicek , Carlos G Girón , Darren K Griffin , Richard Hall , Greg Hannum , Thibaut Hourlier , Kerstin Howe , David A Hume , Osagie Izuogu , Kristi Kim , Sergey Koren , Haibou Liu , Nancy Manchanda , Fergal J Martin , Dan J Nonneman , Rebecca E O'Connor , Adam M Phillippy , Gary A Rohrer , Benjamin D Rosen , Laurie A Rund , Carole A Sargent , Lawrence B Schook , Steven G Schroeder , Ariel S Schwartz , Ben M Skinner , Richard Talbot , Elizabeth Tseng , Christopher K Tuggle , Mick Watson , Timothy P L Smith , Alan L Archibald

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.

GigaScience

Avec: Edward S Rice , Sergey Koren , Arang Rhie , Michael P Heaton , Theodore S Kalbfleisch , Timothy Hardy , Peter H Hackett , Derek M Bickhart , Benjamin D Rosen , Brian Vander Ley , Nicholas W Maurer , Richard E Green , Adam M Phillippy , Jessica L Petersen , Timothy P L Smith

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential.

Genome medicine

Avec: Kara A Moser , Elliott F Drábek , Ankit Dwivedi , Emily M Stucke , Jonathan Crabtree , Antoine Dara , Zalak Shah , Matthew Adams , Tao Li , Priscila T Rodrigues , Sergey Koren , Adam M Phillippy , James B Munro , Amed Ouattara , Benjamin C Sparklin , Julie C Dunning Hotopp , Kirsten E Lyke , Lisa Sadzewicz , Luke J Tallon , Michele D Spring , Krisada Jongsakul , Chanthap Lon , David L Saunders , Marcelo U Ferreira , Myaing M Nyunt , Miriam K Laufer , Mark A Travassos , Robert W Sauerwein , Shannon Takala-Harrison , Claire M Fraser , B Kim Lee Sim , Stephen L Hoffman , Christopher V Plowe , Joana C Silva

Obestatin levels in response to a meal and association with subsequent appetite sensations in maintenance hemodialysis patients.

Clinical nutrition (Edinburgh, Scotland)

Avec: Ilia Beberashvili , Ekaterina Ptashkin , Ada Azar , Ramzia Abu Hamad , Shlomit Koren , Kobi Stav , Shai Efrati

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.

Nature communications

Avec: Alexander T Dilthey , Chirag Jain , Sergey Koren , Adam M Phillippy

Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.

Briefings in bioinformatics

Avec: Nathan D Olson , Todd J Treangen , Christopher M Hill , Victoria Cepeda-Espinoza , Jay Ghurye , Sergey Koren , Mihai Pop

Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.

Nature communications

Avec: Zev N Kronenberg , Arang Rhie , Sergey Koren , Gregory T Concepcion , Paul Peluso , Katherine M Munson , David Porubsky , Kristen Kuhn , Kathryn A Mueller , Wai Yee Low , Stefan Hiendleder , Olivier Fedrigo , Ivan Liachko , Richard J Hall , Adam M Phillippy , Evan E Eichler , John L Williams , Timothy P L Smith , Erich D Jarvis , Shawn T Sullivan , Sarah B Kingan

De novo assembly of the cattle reference genome with single-molecule sequencing.

GigaScience

Avec: Benjamin D Rosen , Derek M Bickhart , Robert D Schnabel , Sergey Koren , Christine G Elsik , Elizabeth Tseng , Troy N Rowan , Wai Y Low , Aleksey Zimin , Christine Couldrey , Richard Hall , Wenli Li , Arang Rhie , Jay Ghurye , Stephanie D McKay , Françoise Thibaud-Nissen , Jinna Hoffman , Brenda M Murdoch , Warren M Snelling , Tara G McDaneld , John A Hammond , John C Schwartz , Wilson Nandolo , Darren E Hagen , Christian Dreischer , Sebastian J Schultheiss , Steven G Schroeder , Adam M Phillippy , John B Cole , Curtis P Van Tassell , George Liu , Timothy P L Smith , Juan F Medrano

Differentiated Thyroid Cancer with Biochemical Incomplete Response: Clinico-Pathological Characteristics and Long Term Disease Outcomes.

Cancers

Avec: Miriam Steinschneider , Jacob Pitaro , Shlomit Koren , Yuval Mizrakli , Carlos Benbassat , Limor Muallem Kalmovich

The whale shark genome reveals patterns of vertebrate gene family evolution.

eLife

Avec: Milton Tan , Anthony K Redmond , Helen Dooley , Ryo Nozu , Keiichi Sato , Shigehiro Kuraku , Sergey Koren , Adam M Phillippy , Alistair Dm Dove , Timothy Read

The Gut Microbiome of Adults With Type 1 Diabetes and Its Association With the Host Glycemic Control.

Diabetes care

Avec: Smadar Shilo , Anastasia Godneva , Marianna Rachmiel , Tal Korem , Yuval Bussi , Dmitry Kolobkov , Tal Karady , Noam Bar , Bat Chen Wolf , Yitav Glantz-Gashai , Michal Cohen , Nehama Zuckerman-Levin , Naim Shehadeh , Noah Gruber , Neriya Levran , Shlomit Koren , Adina Weinberger , Orit Pinhas-Hamiel , Eran Segal

Réseau de co-auteurs

Adam M Phillippy 8 collaborations

Arang Rhie 4 collaborations

Timothy P L Smith 4 collaborations

Derek M Bickhart 3 collaborations

Benjamin D Rosen 3 collaborations

Shlomit Koren 3 collaborations

Chirag Jain 2 collaborations

Richard Hall 2 collaborations

Steven G Schroeder 2 collaborations

Elizabeth Tseng 2 collaborations

Jay Ghurye 2 collaborations

Haowen Zhang 1 collaboration

Claudia Chu 1 collaboration

Brian P Walenz 1 collaboration

Amanda Warr 1 collaboration

Nabeel Affara 1 collaboration

Bronwen Aken 1 collaboration

Hamid Beiki 1 collaboration

Konstantinos Billis 1 collaboration

William Chow 1 collaboration

Lel Eory 1 collaboration

Heather A Finlayson 1 collaboration

Paul Flicek 1 collaboration

Carlos G Girón 1 collaboration

Darren K Griffin 1 collaboration

Greg Hannum 1 collaboration

Thibaut Hourlier 1 collaboration

Kerstin Howe 1 collaboration

David A Hume 1 collaboration

Osagie Izuogu 1 collaboration

Kristi Kim 1 collaboration

Haibou Liu 1 collaboration

Nancy Manchanda 1 collaboration

Fergal J Martin 1 collaboration

Dan J Nonneman 1 collaboration

Rebecca E O'Connor 1 collaboration

Gary A Rohrer 1 collaboration

Laurie A Rund 1 collaboration

Carole A Sargent 1 collaboration

Lawrence B Schook 1 collaboration

Ariel S Schwartz 1 collaboration

Ben M Skinner 1 collaboration

Richard Talbot 1 collaboration

Christopher K Tuggle 1 collaboration

Mick Watson 1 collaboration

Alan L Archibald 1 collaboration

Edward S Rice 1 collaboration

Michael P Heaton 1 collaboration

Theodore S Kalbfleisch 1 collaboration

Timothy Hardy 1 collaboration

Peter H Hackett 1 collaboration

Brian Vander Ley 1 collaboration

Nicholas W Maurer 1 collaboration

Richard E Green 1 collaboration

Jessica L Petersen 1 collaboration

Kara A Moser 1 collaboration

Elliott F Drábek 1 collaboration

Ankit Dwivedi 1 collaboration

Emily M Stucke 1 collaboration

Jonathan Crabtree 1 collaboration

Antoine Dara 1 collaboration

Zalak Shah 1 collaboration

Matthew Adams 1 collaboration

Tao Li 1 collaboration

Priscila T Rodrigues 1 collaboration

James B Munro 1 collaboration

Amed Ouattara 1 collaboration

Benjamin C Sparklin 1 collaboration

Julie C Dunning Hotopp 1 collaboration

Kirsten E Lyke 1 collaboration

Lisa Sadzewicz 1 collaboration

Luke J Tallon 1 collaboration

Michele D Spring 1 collaboration

Krisada Jongsakul 1 collaboration

Chanthap Lon 1 collaboration

David L Saunders 1 collaboration

Marcelo U Ferreira 1 collaboration

Myaing M Nyunt 1 collaboration

Miriam K Laufer 1 collaboration

Mark A Travassos 1 collaboration

Robert W Sauerwein 1 collaboration

Shannon Takala-Harrison 1 collaboration

Claire M Fraser 1 collaboration

B Kim Lee Sim 1 collaboration

Stephen L Hoffman 1 collaboration

Christopher V Plowe 1 collaboration

Joana C Silva 1 collaboration

Ilia Beberashvili 1 collaboration

Ekaterina Ptashkin 1 collaboration

Ada Azar 1 collaboration

Ramzia Abu Hamad 1 collaboration

Kobi Stav 1 collaboration

Shai Efrati 1 collaboration

Alexander T Dilthey 1 collaboration

Nathan D Olson 1 collaboration

Todd J Treangen 1 collaboration

Christopher M Hill 1 collaboration

Victoria Cepeda-Espinoza 1 collaboration

Mihai Pop 1 collaboration

Zev N Kronenberg 1 collaboration

Gregory T Concepcion 1 collaboration

Paul Peluso 1 collaboration

Katherine M Munson 1 collaboration

David Porubsky 1 collaboration

Kristen Kuhn 1 collaboration

Kathryn A Mueller 1 collaboration

Wai Yee Low 1 collaboration

Stefan Hiendleder 1 collaboration

Olivier Fedrigo 1 collaboration

Ivan Liachko 1 collaboration

Richard J Hall 1 collaboration

Evan E Eichler 1 collaboration

John L Williams 1 collaboration

Erich D Jarvis 1 collaboration

Shawn T Sullivan 1 collaboration

Sarah B Kingan 1 collaboration

Robert D Schnabel 1 collaboration

Christine G Elsik 1 collaboration

Troy N Rowan 1 collaboration

Wai Y Low 1 collaboration

Aleksey Zimin 1 collaboration

Christine Couldrey 1 collaboration

Wenli Li 1 collaboration

Stephanie D McKay 1 collaboration

Françoise Thibaud-Nissen 1 collaboration

Jinna Hoffman 1 collaboration

Brenda M Murdoch 1 collaboration

Warren M Snelling 1 collaboration

Tara G McDaneld 1 collaboration

John A Hammond 1 collaboration

John C Schwartz 1 collaboration

Wilson Nandolo 1 collaboration

Darren E Hagen 1 collaboration

Christian Dreischer 1 collaboration

Sebastian J Schultheiss 1 collaboration

John B Cole 1 collaboration

Curtis P Van Tassell 1 collaboration

George Liu 1 collaboration

Juan F Medrano 1 collaboration

Miriam Steinschneider 1 collaboration

Jacob Pitaro 1 collaboration

Yuval Mizrakli 1 collaboration

Carlos Benbassat 1 collaboration

Limor Muallem Kalmovich 1 collaboration

Milton Tan 1 collaboration

Anthony K Redmond 1 collaboration

Helen Dooley 1 collaboration

Ryo Nozu 1 collaboration

Keiichi Sato 1 collaboration

Shigehiro Kuraku 1 collaboration

Alistair Dm Dove 1 collaboration

Timothy Read 1 collaboration

Smadar Shilo 1 collaboration

Anastasia Godneva 1 collaboration

Marianna Rachmiel 1 collaboration

Tal Korem 1 collaboration

Yuval Bussi 1 collaboration

Dmitry Kolobkov 1 collaboration

Tal Karady 1 collaboration

Noam Bar 1 collaboration

Bat Chen Wolf 1 collaboration

Yitav Glantz-Gashai 1 collaboration

Michal Cohen 1 collaboration

Nehama Zuckerman-Levin 1 collaboration

Naim Shehadeh 1 collaboration

Noah Gruber 1 collaboration

Neriya Levran 1 collaboration

Adina Weinberger 1 collaboration

Orit Pinhas-Hamiel 1 collaboration

Eran Segal 1 collaboration