Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
11 07 2019
11 07 2019
Historique:
received:
07
12
2018
accepted:
11
06
2019
entrez:
13
7
2019
pubmed:
13
7
2019
medline:
28
10
2019
Statut:
epublish
Résumé
Metagenomic sequence classification should be fast, accurate and information-rich. Emerging long-read sequencing technologies promise to improve the balance between these factors but most existing methods were designed for short reads. MetaMaps is a new method, specifically developed for long reads, capable of mapping a long-read metagenome to a comprehensive RefSeq database with >12,000 genomes in <16 GB or RAM on a laptop computer. Integrating approximate mapping with probabilistic scoring and EM-based estimation of sample composition, MetaMaps achieves >94% accuracy for species-level read assignment and r
Identifiants
pubmed: 31296857
doi: 10.1038/s41467-019-10934-2
pii: 10.1038/s41467-019-10934-2
pmc: PMC6624308
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
3066Références
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