Tal Korem

Affiliations

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Department of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA.
CIFAR Azrieli Global Scholars Program, CIFAR, Toronto, Ontario, Canada.

ORCID: http://orcid.org/0000-0002-0609-0858

Publications (23)

A reference map of potential determinants for the human serum metabolome.

Nature

Avec: Noam Bar , Tal Korem , Omer Weissbrod , David Zeevi , Daphna Rothschild , Sigal Leviatan , Noa Kosower , Maya Lotan-Pompan , Adina Weinberger , Caroline I Le Roy , Cristina Menni , Alessia Visconti , Mario Falchi , Tim D Spector , Auteur inconnu , Jerzy Adamski , Paul W Franks , Oluf Pedersen , Eran Segal

Minimal Associations between Short-Term Dietary Intake and Salivary Microbiome Composition.

Microorganisms

Avec: Judith Kim , Minyi Lee , Brittany Baldwin-Hunter , Quinn S Solfisburg , Charles J Lightdale , Tal Korem , Chin Hur , Julian A Abrams

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates.

Genome research

Avec: Tyler A Joseph , Philippe Chlenski , Aviya Litman , Tal Korem , Itsik Pe'er

Structural variation in the gut microbiome associates with host health.

Nature

Avec: David Zeevi , Tal Korem , Anastasia Godneva , Noam Bar , Alexander Kurilshikov , Maya Lotan-Pompan , Adina Weinberger , Jingyuan Fu , Cisca Wijmenga , Alexandra Zhernakova , Eran Segal

A non-optimal cervicovaginal microbiota in pregnancy is associated with a distinct metabolomic signature among non-Hispanic Black individuals.

Scientific reports

Avec: Kristin D Gerson , Jingqiu Liao , Clare McCarthy , Heather H Burris , Tal Korem , Maayan Levy , Jacques Ravel , Michal A Elovitz

The Salivary Microbiome and Predicted Metabolite Production are Associated with Barrett's Esophagus and High Grade Dysplasia or Adenocarcinoma.

Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology

Avec: Quinn S Solfisburg , Federico Baldini , Brittany Baldwin-Hunter , George I Austin , Harry H Lee , Heekuk Park , Daniel E Freedberg , Charles J Lightdale , Tal Korem , Julian A Abrams

Microdiversity of the Vaginal Microbiome is Associated with Preterm Birth.

bioRxiv : the preprint server for biology

Avec: Jingqiu Liao , Liat Shenhav , Julia A Urban , Myrna Serrano , Bin Zhu , Gregory A Buck , Tal Korem

Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.

Nature biotechnology

Avec: George I Austin , Heekuk Park , Yoli Meydan , Dwayne Seeram , Tanya Sezin , Yue Clare Lou , Brian A Firek , Michael J Morowitz , Jillian F Banfield , Angela M Christiano , Itsik Pe'er , Anne-Catrin Uhlemann , Liat Shenhav , Tal Korem

Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models.

bioRxiv : the preprint server for biology

Avec: George I Austin , Aya Brown Kav , Heekuk Park , Jana Biermann , Anne-Catrin Uhlemann , Tal Korem

Planning and Analyzing a Low-Biomass Microbiome Study: A Data Analysis Perspective.

The Journal of infectious diseases

Avec: George I Austin , Tal Korem

The Gut Microbiome of Adults With Type 1 Diabetes and Its Association With the Host Glycemic Control.

Diabetes care

Avec: Smadar Shilo , Anastasia Godneva , Marianna Rachmiel , Tal Korem , Yuval Bussi , Dmitry Kolobkov , Tal Karady , Noam Bar , Bat Chen Wolf , Yitav Glantz-Gashai , Michal Cohen , Nehama Zuckerman-Levin , Naim Shehadeh , Noah Gruber , Neriya Levran , Shlomit Koren , Adina Weinberger , Orit Pinhas-Hamiel , Eran Segal

The Salivary Microbiome and Predicted Metabolite Production are Associated with Progression from Barrett's Esophagus to Esophageal Adenocarcinoma.

bioRxiv : the preprint server for biology

Avec: Quinn S Solfisburg , Federico Baldini , Brittany L Baldwin-Hunter , Harry H Lee , Heekuk Park , Daniel E Freedberg , Charles J Lightdale , Tal Korem , Julian A Abrams

Distributional bias compromises leave-one-out cross-validation.

ArXiv

Avec: George I Austin , Itsik Pe'er , Tal Korem

Relationship of the Esophageal Microbiome and Tissue Gene Expression and Links to the Oral Microbiome: A Randomized Clinical Trial.

Clinical and translational gastroenterology

Avec: Medini K Annavajhala , Michael May , Griselda Compres , Daniel E Freedberg , Roseanna Graham , Stephania Stump , Jianwen Que , Tal Korem , Anne-Catrin Uhlemann , Julian A Abrams

Embracing Metagenomic Complexity with a Genome-Free Approach.

mSystems

Avec: Izaak Coleman , Tal Korem

Robustness of cancer microbiome signals over a broad range of methodological variation.

Oncogene

Avec: Gregory D Sepich-Poore , Daniel McDonald , Evguenia Kopylova , Caitlin Guccione , Qiyun Zhu , George Austin , Carolina Carpenter , Serena Fraraccio , Stephen Wandro , Tomasz Kosciolek , Stefan Janssen , Jessica L Metcalf , Se Jin Song , Jad Kanbar , Sandrine Miller-Montgomery , Robert Heaton , Rana Mckay , Sandip Pravin Patel , Austin D Swafford , Tal Korem , Rob Knight

Microdiversity of the vaginal microbiome is associated with preterm birth.

Nature communications

Avec: Jingqiu Liao , Liat Shenhav , Julia A Urban , Myrna Serrano , Bin Zhu , Gregory A Buck , Tal Korem

Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome.

Nature microbiology

Avec: William F Kindschuh , Federico Baldini , Martin C Liu , Jingqiu Liao , Yoli Meydan , Harry H Lee , Almut Heinken , Ines Thiele , Christoph A Thaiss , Maayan Levy , Tal Korem

Microsynteny is a powerful front for microbial strain tracking.

Cell reports methods

Avec: Peiwen Cai , Tal Korem

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View.

Trends in cancer

Avec: Joao B Xavier , Vincent B Young , Joseph Skufca , Fiona Ginty , Traci Testerman , Alexander T Pearson , Paul Macklin , Amir Mitchell , Ilya Shmulevich , Lei Xie , J Gregory Caporaso , Keith A Crandall , Nicole L Simone , Filipa Godoy-Vitorino , Timothy J Griffin , Katrine L Whiteson , Heather H Gustafson , Daniel J Slade , Thomas M Schmidt , Marina R S Walther-Antonio , Tal Korem , Bobbie-Jo M Webb-Robertson , Mark P Styczynski , W Evan Johnson , Christian Jobin , Jason M Ridlon , Andrew Y Koh , Michael Yu , Libusha Kelly , Jennifer A Wargo

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.

Cell

Avec: Ruben A T Mars , Yi Yang , Tonya Ward , Mo Houtti , Sambhawa Priya , Heather R Lekatz , Xiaojia Tang , Zhifu Sun , Krishna R Kalari , Tal Korem , Yogesh Bhattarai , Tenghao Zheng , Noam Bar , Gary Frost , Abigail J Johnson , Will van Treuren , Shuo Han , Tamas Ordog , Madhusudan Grover , Justin Sonnenburg , Mauro D'Amato , Michael Camilleri , Eran Elinav , Eran Segal , Ran Blekhman , Gianrico Farrugia , Jonathan R Swann , Dan Knights , Purna C Kashyap

Prediction of Personal Glycemic Responses to Food for Individuals With Type 1 Diabetes Through Integration of Clinical and Microbial Data.

Diabetes care

Avec: Smadar Shilo , Anastasia Godneva , Marianna Rachmiel , Tal Korem , Dmitry Kolobkov , Tal Karady , Noam Bar , Bat Chen Wolf , Yitav Glantz-Gashai , Michal Cohen , Nehama Zuckerman Levin , Naim Shehadeh , Noah Gruber , Neriya Levran , Shlomit Koren , Adina Weinberger , Orit Pinhas-Hamiel , Eran Segal

The hygiene hypothesis, the COVID pandemic, and consequences for the human microbiome.

Proceedings of the National Academy of Sciences of the United States of America

Avec: B Brett Finlay , Katherine R Amato , Meghan Azad , Martin J Blaser , Thomas C G Bosch , Hiutung Chu , Maria Gloria Dominguez-Bello , Stanislav Dusko Ehrlich , Eran Elinav , Naama Geva-Zatorsky , Philippe Gros , Karen Guillemin , Frédéric Keck , Tal Korem , Margaret J McFall-Ngai , Melissa K Melby , Mark Nichter , Sven Pettersson , Hendrik Poinar , Tobias Rees , Carolina Tropini , Liping Zhao , Tamara Giles-Vernick

Réseau de co-auteurs

Noam Bar 5 collaborations

Eran Segal 5 collaborations

George I Austin 5 collaborations

Adina Weinberger 4 collaborations

Julian A Abrams 4 collaborations

Jingqiu Liao 4 collaborations

Heekuk Park 4 collaborations

Quinn S Solfisburg 3 collaborations

Charles J Lightdale 3 collaborations

Itsik Pe'er 3 collaborations

Anastasia Godneva 3 collaborations

Federico Baldini 3 collaborations

Harry H Lee 3 collaborations

Daniel E Freedberg 3 collaborations

Liat Shenhav 3 collaborations

Anne-Catrin Uhlemann 3 collaborations

David Zeevi 2 collaborations

Maya Lotan-Pompan 2 collaborations

Brittany Baldwin-Hunter 2 collaborations

Maayan Levy 2 collaborations

Julia A Urban 2 collaborations

Myrna Serrano 2 collaborations

Bin Zhu 2 collaborations

Gregory A Buck 2 collaborations

Yoli Meydan 2 collaborations

Smadar Shilo 2 collaborations

Marianna Rachmiel 2 collaborations

Dmitry Kolobkov 2 collaborations

Tal Karady 2 collaborations

Bat Chen Wolf 2 collaborations

Yitav Glantz-Gashai 2 collaborations

Michal Cohen 2 collaborations

Naim Shehadeh 2 collaborations

Noah Gruber 2 collaborations

Neriya Levran 2 collaborations

Shlomit Koren 2 collaborations

Orit Pinhas-Hamiel 2 collaborations

Eran Elinav 2 collaborations

Omer Weissbrod 1 collaboration

Daphna Rothschild 1 collaboration

Sigal Leviatan 1 collaboration

Noa Kosower 1 collaboration

Caroline I Le Roy 1 collaboration

Cristina Menni 1 collaboration

Alessia Visconti 1 collaboration

Mario Falchi 1 collaboration

Tim D Spector 1 collaboration

None None 1 collaboration

Jerzy Adamski 1 collaboration

Paul W Franks 1 collaboration

Oluf Pedersen 1 collaboration

Judith Kim 1 collaboration

Minyi Lee 1 collaboration

Chin Hur 1 collaboration

Tyler A Joseph 1 collaboration

Philippe Chlenski 1 collaboration

Aviya Litman 1 collaboration

Alexander Kurilshikov 1 collaboration

Jingyuan Fu 1 collaboration

Cisca Wijmenga 1 collaboration

Alexandra Zhernakova 1 collaboration

Kristin D Gerson 1 collaboration

Clare McCarthy 1 collaboration

Heather H Burris 1 collaboration

Jacques Ravel 1 collaboration

Michal A Elovitz 1 collaboration

Dwayne Seeram 1 collaboration

Tanya Sezin 1 collaboration

Yue Clare Lou 1 collaboration

Brian A Firek 1 collaboration

Michael J Morowitz 1 collaboration

Jillian F Banfield 1 collaboration

Angela M Christiano 1 collaboration

Aya Brown Kav 1 collaboration

Jana Biermann 1 collaboration

Yuval Bussi 1 collaboration

Nehama Zuckerman-Levin 1 collaboration

Brittany L Baldwin-Hunter 1 collaboration

Medini K Annavajhala 1 collaboration

Michael May 1 collaboration

Griselda Compres 1 collaboration

Roseanna Graham 1 collaboration

Stephania Stump 1 collaboration

Jianwen Que 1 collaboration

Izaak Coleman 1 collaboration

Gregory D Sepich-Poore 1 collaboration

Daniel McDonald 1 collaboration

Evguenia Kopylova 1 collaboration

Caitlin Guccione 1 collaboration

Qiyun Zhu 1 collaboration

George Austin 1 collaboration

Carolina Carpenter 1 collaboration

Serena Fraraccio 1 collaboration

Stephen Wandro 1 collaboration

Tomasz Kosciolek 1 collaboration

Stefan Janssen 1 collaboration

Jessica L Metcalf 1 collaboration

Se Jin Song 1 collaboration

Jad Kanbar 1 collaboration

Sandrine Miller-Montgomery 1 collaboration

Robert Heaton 1 collaboration

Rana Mckay 1 collaboration

Sandip Pravin Patel 1 collaboration

Austin D Swafford 1 collaboration

Rob Knight 1 collaboration

William F Kindschuh 1 collaboration

Martin C Liu 1 collaboration

Almut Heinken 1 collaboration

Ines Thiele 1 collaboration

Christoph A Thaiss 1 collaboration

Peiwen Cai 1 collaboration

Joao B Xavier 1 collaboration

Vincent B Young 1 collaboration

Joseph Skufca 1 collaboration

Fiona Ginty 1 collaboration

Traci Testerman 1 collaboration

Alexander T Pearson 1 collaboration

Paul Macklin 1 collaboration

Amir Mitchell 1 collaboration

Ilya Shmulevich 1 collaboration

Lei Xie 1 collaboration

J Gregory Caporaso 1 collaboration

Keith A Crandall 1 collaboration

Nicole L Simone 1 collaboration

Filipa Godoy-Vitorino 1 collaboration

Timothy J Griffin 1 collaboration

Katrine L Whiteson 1 collaboration

Heather H Gustafson 1 collaboration

Daniel J Slade 1 collaboration

Thomas M Schmidt 1 collaboration

Marina R S Walther-Antonio 1 collaboration

Bobbie-Jo M Webb-Robertson 1 collaboration

Mark P Styczynski 1 collaboration

W Evan Johnson 1 collaboration

Christian Jobin 1 collaboration

Jason M Ridlon 1 collaboration

Andrew Y Koh 1 collaboration

Michael Yu 1 collaboration

Libusha Kelly 1 collaboration

Jennifer A Wargo 1 collaboration

Ruben A T Mars 1 collaboration

Yi Yang 1 collaboration

Tonya Ward 1 collaboration

Mo Houtti 1 collaboration

Sambhawa Priya 1 collaboration

Heather R Lekatz 1 collaboration

Xiaojia Tang 1 collaboration

Zhifu Sun 1 collaboration

Krishna R Kalari 1 collaboration

Yogesh Bhattarai 1 collaboration

Tenghao Zheng 1 collaboration

Gary Frost 1 collaboration

Abigail J Johnson 1 collaboration

Will van Treuren 1 collaboration

Shuo Han 1 collaboration

Tamas Ordog 1 collaboration

Madhusudan Grover 1 collaboration

Justin Sonnenburg 1 collaboration

Mauro D'Amato 1 collaboration

Michael Camilleri 1 collaboration

Ran Blekhman 1 collaboration

Gianrico Farrugia 1 collaboration

Jonathan R Swann 1 collaboration

Dan Knights 1 collaboration

Purna C Kashyap 1 collaboration

Nehama Zuckerman Levin 1 collaboration

B Brett Finlay 1 collaboration

Katherine R Amato 1 collaboration

Meghan Azad 1 collaboration

Martin J Blaser 1 collaboration

Thomas C G Bosch 1 collaboration

Hiutung Chu 1 collaboration

Maria Gloria Dominguez-Bello 1 collaboration

Stanislav Dusko Ehrlich 1 collaboration

Naama Geva-Zatorsky 1 collaboration

Philippe Gros 1 collaboration

Karen Guillemin 1 collaboration

Frédéric Keck 1 collaboration

Margaret J McFall-Ngai 1 collaboration

Melissa K Melby 1 collaboration

Mark Nichter 1 collaboration

Sven Pettersson 1 collaboration

Hendrik Poinar 1 collaboration

Tobias Rees 1 collaboration

Carolina Tropini 1 collaboration

Liping Zhao 1 collaboration

Tamara Giles-Vernick 1 collaboration