Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
22 03 2023
Historique:
received: 14 10 2022
accepted: 10 03 2023
entrez: 23 3 2023
pubmed: 24 3 2023
medline: 25 3 2023
Statut: epublish

Résumé

Clinician generated segmentation of tumor and healthy tissue regions of interest (ROIs) on medical images is crucial for radiotherapy. However, interobserver segmentation variability has long been considered a significant detriment to the implementation of high-quality and consistent radiotherapy dose delivery. This has prompted the increasing development of automated segmentation approaches. However, extant segmentation datasets typically only provide segmentations generated by a limited number of annotators with varying, and often unspecified, levels of expertise. In this data descriptor, numerous clinician annotators manually generated segmentations for ROIs on computed tomography images across a variety of cancer sites (breast, sarcoma, head and neck, gynecologic, gastrointestinal; one patient per cancer site) for the Contouring Collaborative for Consensus in Radiation Oncology challenge. In total, over 200 annotators (experts and non-experts) contributed using a standardized annotation platform (ProKnow). Subsequently, we converted Digital Imaging and Communications in Medicine data into Neuroimaging Informatics Technology Initiative format with standardized nomenclature for ease of use. In addition, we generated consensus segmentations for experts and non-experts using the Simultaneous Truth and Performance Level Estimation method. These standardized, structured, and easily accessible data are a valuable resource for systematically studying variability in segmentation applications.

Identifiants

pubmed: 36949088
doi: 10.1038/s41597-023-02062-w
pii: 10.1038/s41597-023-02062-w
pmc: PMC10033824
doi:

Types de publication

Dataset Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

161

Subventions

Organisme : NIDCR NIH HHS
ID : F31 DE031502
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA008748
Pays : United States
Organisme : NIDCR NIH HHS
ID : R01 DE028290
Pays : United States

Informations de copyright

© 2023. The Author(s).

Références

Radiat Oncol. 2012 Mar 13;7:32
pubmed: 22414264
Sci Data. 2019 Jan 29;6:190003
pubmed: 30694227
JCO Clin Cancer Inform. 2019 Oct;3:1-9
pubmed: 31756136
Clin Transl Radiat Oncol. 2018 Jun 11;11:33-39
pubmed: 29928706
Sci Data. 2022 Jul 11;9(1):397
pubmed: 35817778
Sci Data. 2015 Nov 10;2:150059
pubmed: 26594378
Semin Radiat Oncol. 2019 Jul;29(3):185-197
pubmed: 31027636
Phys Med Biol. 2020 Aug 27;65(17):175007
pubmed: 32503027
Spinal Cord. 2018 Jul;56(7):625
pubmed: 29977003
Sci Data. 2022 Jul 23;9(1):440
pubmed: 35871247
Clin Transl Radiat Oncol. 2022 Jun 18;36:47-55
pubmed: 35782963
Sci Data. 2021 Apr 29;8(1):121
pubmed: 33927208
Sci Rep. 2022 Dec 21;12(1):22059
pubmed: 36543852
Sci Data. 2022 Aug 2;9(1):470
pubmed: 35918336
J Med Internet Res. 2021 Jul 12;23(7):e26151
pubmed: 34255661
Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug;2016:3342-3345
pubmed: 28269019
IEEE Trans Med Imaging. 2004 Jul;23(7):903-21
pubmed: 15250643
J Digit Imaging. 2018 Jun;31(3):290-303
pubmed: 29181613
Phys Med Biol. 2017 May 08;62(11):4479-4495
pubmed: 28480870
J Med Imaging (Bellingham). 2018 Jul;5(3):034002
pubmed: 30840724
Sci Data. 2021 Jul 6;8(1):167
pubmed: 34230489
Med Phys. 2014 May;41(5):050902
pubmed: 24784366
J Digit Imaging. 2012 Oct;25(5):635-45
pubmed: 22349992
J Neurosci Methods. 2016 May 1;264:47-56
pubmed: 26945974
Radiother Oncol. 2021 Jul;160:185-191
pubmed: 33984348
J Med Phys. 2008 Oct;33(4):136-40
pubmed: 19893706
Nat Commun. 2022 Jul 15;13(1):4128
pubmed: 35840566
Pract Radiat Oncol. 2016 Nov - Dec;6(6):442-449
pubmed: 27374191
Radiol Oncol. 2016 May 09;50(3):254-62
pubmed: 27679540
J Med Imaging (Bellingham). 2023 Feb;10(Suppl 1):S11903
pubmed: 36761036
Tech Innov Patient Support Radiat Oncol. 2022 Aug 24;23:33-40
pubmed: 36090011
Med Phys. 2012 Oct;39(10):6332-8
pubmed: 23039669
Clin Oncol (R Coll Radiol). 2022 Feb;34(2):74-88
pubmed: 34996682
Int J Radiat Oncol Biol Phys. 2018 Mar 15;100(4):1057-1066
pubmed: 29485047
Radiol Bras. 2021 May-Jun;54(3):155-164
pubmed: 34108762
Radiother Oncol. 2019 Aug;137:9-15
pubmed: 31048235
Head Neck Tumor Segm Chall (2021). 2022;13209:121-132
pubmed: 35399869
Ecancermedicalscience. 2020 Jan 06;14:996
pubmed: 32153651
Pract Radiat Oncol. 2021 May-Jun;11(3):226-229
pubmed: 33607331
Sci Rep. 2021 May 27;11(1):11174
pubmed: 34045563
Radiat Oncol. 2021 Jun 28;16(1):120
pubmed: 34183040
Int J Radiat Oncol Biol Phys. 2022 Jun 1;113(2):426-436
pubmed: 35124134
Sci Data. 2022 Aug 4;9(1):475
pubmed: 35927290

Auteurs

Kareem A Wahid (KA)

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Diana Lin (D)

Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Onur Sahin (O)

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Michael Cislo (M)

Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Benjamin E Nelms (BE)

Canis Lupus, LLC, Merrimac, WI, USA.

Renjie He (R)

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Mohammed A Naser (MA)

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Simon Duke (S)

Department of Radiation Oncology, Cambridge University Hospitals, Cambridge, UK.

Michael V Sherer (MV)

Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA, USA.

John P Christodouleas (JP)

Department of Radiation Oncology, The University of Pennsylvania Cancer Center, Philadelphia, PA, USA.
Elekta, Atlanta, GA, USA.

Abdallah S R Mohamed (ASR)

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

James D Murphy (JD)

Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA, USA.

Clifton D Fuller (CD)

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA. cdfuller@mdanderson.org.

Erin F Gillespie (EF)

Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA. efgillespie@ucsd.edu.
Fred Hutchinson Cancer Center, Seattle, WA, USA. efgillespie@ucsd.edu.

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