Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.


Journal

Plant physiology
ISSN: 1532-2548
Titre abrégé: Plant Physiol
Pays: United States
ID NLM: 0401224

Informations de publication

Date de publication:
31 05 2023
Historique:
received: 09 12 2022
accepted: 03 03 2023
pmc-release: 24 03 2024
medline: 2 6 2023
pubmed: 25 3 2023
entrez: 24 3 2023
Statut: ppublish

Résumé

Rice (Oryza sativa) is of paramount importance for global nutrition, supplying at least 20% of global calories. However, water scarcity and increased drought severity are anticipated to reduce rice yields globally. We explored stomatal developmental genetics as a mechanism for improving drought resilience in rice while maintaining yield under climate stress. CRISPR/Cas9-mediated knockouts of the positive regulator of stomatal development STOMAGEN and its paralog EPIDERMAL PATTERNING FACTOR-LIKE10 (EPFL10) yielded lines with ∼25% and 80% of wild-type stomatal density, respectively. epfl10 lines with moderate reductions in stomatal density were able to conserve water to similar extents as stomagen lines but did not suffer from the concomitant reductions in stomatal conductance, carbon assimilation, or thermoregulation observed in stomagen knockouts. Moderate reductions in stomatal density achieved by editing EPFL10 present a climate-adaptive approach for safeguarding yield in rice. Editing the paralog of STOMAGEN in other species may provide a means for tuning stomatal density in agriculturally important crops beyond rice.

Identifiants

pubmed: 36960567
pii: 7085312
doi: 10.1093/plphys/kiad183
pmc: PMC10231365
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

1168-1182

Subventions

Organisme : NCRR NIH HHS
ID : S10 RR026866
Pays : United States

Informations de copyright

Published by Oxford University Press on behalf of American Society of Plant Biologists 2023.

Déclaration de conflit d'intérêts

Conflict of interest statement. None declared.

Références

Plant Cell Physiol. 2017 Dec 1;58(12):2085-2094
pubmed: 29040767
Nat Commun. 2011 Oct 25;2:512
pubmed: 22027592
Development. 2009 Jul;136(13):2265-76
pubmed: 19502487
Plant Mol Biol. 1997 Sep;35(1-2):25-34
pubmed: 9291957
J Exp Bot. 2000 Feb;51 Spec No:447-58
pubmed: 10938853
Sci Rep. 2018 Feb 16;8(1):3203
pubmed: 29453432
Plant Cell Rep. 2017 May;36(5):745-757
pubmed: 28349358
Curr Biol. 2020 Jun 8;30(11):2001-2012.e2
pubmed: 32302587
Plant J. 2016 Mar;85(5):648-59
pubmed: 26833589
New Phytol. 2005 Nov;168(2):275-92
pubmed: 16219068
Plant Physiol. 2001 Feb;125(2):935-42
pubmed: 11161050
Plant Physiol. 2018 Feb;176(2):990-1003
pubmed: 29192028
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Curr Biol. 2009 May 26;19(10):864-9
pubmed: 19398336
J Plant Physiol. 2019 Mar - Apr;234-235:18-27
pubmed: 30660943
New Phytol. 2015 Oct;208(2):336-41
pubmed: 26268722
CRISPR J. 2022 Feb;5(1):123-130
pubmed: 35119294
BMC Bioinformatics. 2005 Feb 15;6:31
pubmed: 15713233
New Phytol. 2019 Jan;221(1):371-384
pubmed: 30043395
Nature. 2015 Jun 25;522(7557):439-43
pubmed: 26083750
Curr Opin Plant Biol. 2018 Feb;41:1-7
pubmed: 28826033
J Exp Bot. 2019 Sep 24;70(18):4737-4748
pubmed: 31172183
Nature. 2010 Jan 14;463(7278):241-4
pubmed: 20010603
Nat Rev Genet. 2008 Dec;9(12):938-50
pubmed: 19015656
Sci Rep. 2019 Apr 3;9(1):5584
pubmed: 30944383
Bioinformatics. 2015 Oct 1;31(19):3210-2
pubmed: 26059717
Curr Opin Plant Biol. 2019 Jun;49:1-7
pubmed: 30851622
Front Plant Sci. 2022 May 17;13:878001
pubmed: 35656017
Nat Plants. 2021 Mar;7(3):287-294
pubmed: 33619356
Plant J. 2020 Feb;101(4):780-799
pubmed: 31571301
Plant Cell Environ. 2015 Sep;38(9):1686-98
pubmed: 25142172
Genes Dev. 2007 Jul 15;21(14):1720-5
pubmed: 17639078
J Exp Bot. 2021 Jun 22;72(13):4981-4992
pubmed: 33852008
New Phytol. 2010 May;186(3):609-14
pubmed: 20149115
Elife. 2013 Mar 19;2:e00354
pubmed: 23539454
PLoS One. 2016 Oct 12;11(10):e0164576
pubmed: 27732636
PLoS Comput Biol. 2011 Oct;7(10):e1002195
pubmed: 22039361
New Phytol. 2019 Jan;221(1):93-98
pubmed: 29987878
Front Plant Sci. 2020 Feb 11;10:1783
pubmed: 32117345
Plant J. 2019 Jun;98(5):884-897
pubmed: 30771248
New Phytol. 2014 Mar;201(4):1218-1226
pubmed: 24251982
Plant Cell Physiol. 2009 Jun;50(6):1019-31
pubmed: 19435754
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419
pubmed: 33125078
Cold Spring Harb Perspect Biol. 2019 May 1;11(5):
pubmed: 30988007
Development. 2021 Aug 15;148(16):
pubmed: 34328169
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Genome Biol. 2016 Sep 27;17(1):194
pubmed: 27671052
Plant Physiol. 2017 Jun;174(2):776-787
pubmed: 28461401
PLoS One. 2010 Mar 10;5(3):e9490
pubmed: 20224823
Funct Plant Biol. 2007 Apr;34(3):172-177
pubmed: 32689343
J Exp Bot. 2011 Jul;62(11):4067-77
pubmed: 21527630
Genes Dev. 2017 May 1;31(9):927-938
pubmed: 28536146
Plant Cell Rep. 2004 Feb;22(7):483-9
pubmed: 14551731
Proc Natl Acad Sci U S A. 2021 Jul 6;118(27):
pubmed: 34215692
Plant Physiol. 2021 Jun 11;186(2):998-1012
pubmed: 33693867
Trends Genet. 2010 Oct;26(10):425-30
pubmed: 20708291
Nat Food. 2021 Nov;2(11):873-885
pubmed: 37117503
New Phytol. 2015 Jul;207(1):188-195
pubmed: 25754246
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
J Exp Bot. 2013 Jan;64(2):495-505
pubmed: 23264516
Nat Commun. 2021 Feb 2;12(1):735
pubmed: 33531490
Cell Mol Life Sci. 2011 Jun;68(12):2081-8
pubmed: 21509541

Auteurs

Nicholas G Karavolias (NG)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.
Innovative Genomics Institute, Berkeley, CA 94704, USA.

Dhruv Patel-Tupper (D)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.
Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Kyungyong Seong (K)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.

Michelle Tjahjadi (M)

Innovative Genomics Institute, Berkeley, CA 94704, USA.

Gloria-Alexandra Gueorguieva (GA)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.
Innovative Genomics Institute, Berkeley, CA 94704, USA.

Jaclyn Tanaka (J)

Innovative Genomics Institute, Berkeley, CA 94704, USA.

Ana Gallegos Cruz (A)

Innovative Genomics Institute, Berkeley, CA 94704, USA.

Samantha Lieberman (S)

Innovative Genomics Institute, Berkeley, CA 94704, USA.

Lillian Litvak (L)

Innovative Genomics Institute, Berkeley, CA 94704, USA.

Douglas Dahlbeck (D)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.
Innovative Genomics Institute, Berkeley, CA 94704, USA.

Myeong-Je Cho (MJ)

Innovative Genomics Institute, Berkeley, CA 94704, USA.

Krishna K Niyogi (KK)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.
Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Brian J Staskawicz (BJ)

Plant and Microbial Biology Department, UC Berkeley, Berkeley, CA 94720, USA.
Innovative Genomics Institute, Berkeley, CA 94704, USA.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Drought Resistance Gene Expression Profiling Gene Expression Regulation, Plant Gossypium Multigene Family
Semiconductors Photosynthesis Polymers Carbon Dioxide Bacteria
1.00
Oryza Agricultural Irrigation Potassium Sodium Soil

Classifications MeSH