The genomic landscape of familial glioma.


Journal

Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440

Informations de publication

Date de publication:
28 04 2023
Historique:
medline: 1 5 2023
pubmed: 28 4 2023
entrez: 28 4 2023
Statut: ppublish

Résumé

Glioma is a rare brain tumor with a poor prognosis. Familial glioma is a subset of glioma with a strong genetic predisposition that accounts for approximately 5% of glioma cases. We performed whole-genome sequencing on an exploratory cohort of 203 individuals from 189 families with a history of familial glioma and an additional validation cohort of 122 individuals from 115 families. We found significant enrichment of rare deleterious variants of seven genes in both cohorts, and the most significantly enriched gene was

Identifiants

pubmed: 37115922
doi: 10.1126/sciadv.ade2675
pmc: PMC10146888
doi:

Substances chimiques

DMBT1 protein, human 0
Calcium-Binding Proteins 0
DNA-Binding Proteins 0
Tumor Suppressor Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

eade2675

Subventions

Organisme : Cancer Research UK
ID : 25514
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : T32 HL092332
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA217105
Pays : United States
Organisme : Medical Research Council
ID : MR/M009203/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_14089
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_EX_MR/M009203/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/T028068/1
Pays : United Kingdom

Références

Nature. 1990 Dec 20-27;348(6303):747-9
pubmed: 2259385
Cell. 2019 Jan 24;176(3):535-548.e24
pubmed: 30661751
Mol Oncol. 2020 Jan;14(1):69-86
pubmed: 31665549
Mol Med. 1997 Jan;3(1):5-20
pubmed: 9132280
DNA Repair (Amst). 2010 Dec 10;9(12):1219-28
pubmed: 21035408
Methods. 2015 Jan 15;72:65-75
pubmed: 25448293
Cancer Epidemiol Biomarkers Prev. 2012 Dec;21(12):2242-51
pubmed: 22962404
J Neurosci Methods. 2012 Jun 15;207(2):172-80
pubmed: 22521325
J Neurosurg. 2003 Sep;99(3):467-73
pubmed: 12959431
Bioinformatics. 2012 Sep 15;28(18):i333-i339
pubmed: 22962449
PLoS Comput Biol. 2013;9(8):e1003118
pubmed: 23950696
Mol Cell Proteomics. 2014 Sep;13(9):2183-97
pubmed: 24830416
Nat Genet. 2016 Oct;48(10):1112-8
pubmed: 27618451
Nat Genet. 2013 Feb;45(2):136-44
pubmed: 23263490
Hum Mutat. 2019 May;40(5):516-524
pubmed: 30720243
Nat Genet. 1994 Dec;8(4):399-404
pubmed: 7894493
Int J Oncol. 2014 Jul;45(1):77-81
pubmed: 24788313
Nucleic Acids Res. 2014 Dec 1;42(21):13074-81
pubmed: 25326330
Science. 2016 May 27;352(6289):1052-3
pubmed: 27230363
Pharmacogenomics. 2004 Jun;5(4):433-8
pubmed: 15165179
Cancer Res. 2002 Jul 1;62(13):3798-802
pubmed: 12097292
Fam Cancer. 2022 Jul;21(3):289-294
pubmed: 33999380
Nat Commun. 2016 Mar 10;7:10972
pubmed: 26960254
Int J Cancer. 2002 May 10;99(2):260-6
pubmed: 11979442
Cancer Res. 2011 Dec 15;71(24):7568-75
pubmed: 22037877
J Neuropathol Exp Neurol. 2005 Jun;64(6):479-89
pubmed: 15977639
Genome Biol. 2014;15(12):550
pubmed: 25516281
Nature. 2020 May;581(7809):434-443
pubmed: 32461654
Nat Genet. 2013 Oct;45(10):1141-9
pubmed: 23917401
Dev Biol. 2021 Feb;470:121-135
pubmed: 33248112
Sci Transl Med. 2011 Jun 15;3(87):87re3
pubmed: 21677200
Hum Genet. 2020 May;139(5):569-574
pubmed: 32056000
Kidney Int. 2021 Jul;100(1):171-181
pubmed: 33045259
Neuro Oncol. 2020 Oct 30;22(12 Suppl 2):iv1-iv96
pubmed: 33123732
Acta Neuropathol. 2007 Aug;114(2):97-109
pubmed: 17618441
Nat Genet. 2014 Aug;46(8):912-918
pubmed: 25017105
Nat Genet. 1995 Jan;9(1):70-4
pubmed: 7704028
Nat Commun. 2016 Jan 25;7:10500
pubmed: 26806015
N Engl J Med. 2000 Jul 13;343(2):78-85
pubmed: 10891514
Eur J Cancer. 2013 Apr;49(6):1335-45
pubmed: 23290425
Int J Cancer. 1999 May 5;81(3):366-70
pubmed: 10209950
Cancer Res. 2015 Dec 15;75(24):5341-54
pubmed: 26627007
Cancer Res. 2021 May 15;81(10):2703-2713
pubmed: 33782098
Oncotarget. 2016 Aug 30;7(35):56083-56106
pubmed: 27528230
Genome Biol. 2018 Oct 4;19(1):151
pubmed: 30286773
Trends Genet. 1989 Jul;5(7):217-21
pubmed: 2506682
Sci Rep. 2016 Jun 10;6:27569
pubmed: 27282637
Genet Med. 2016 Apr;18(4):325-32
pubmed: 26133394
J Biol Chem. 2014 May 23;289(21):14782-95
pubmed: 24722987
Nat Rev Clin Oncol. 2012 May 29;9(7):400-13
pubmed: 22641364
Genome Med. 2013 Feb 05;5(2):11
pubmed: 23383720
Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894
pubmed: 30371827
Nature. 2020 Feb;578(7793):166-171
pubmed: 31996845
Acta Oncol. 2005;44(2):114-9
pubmed: 15788289
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Neuro Oncol. 2014 Oct;16(10):1333-40
pubmed: 24723567
EMBO J. 2015 Jun 12;34(12):1630-47
pubmed: 25770585
Neurology. 2013 Jan 1;80(1):92-9
pubmed: 23136261
Am J Epidemiol. 1997 Apr 1;145(7):581-93
pubmed: 9098174
Cancer Discov. 2016 Feb;6(2):166-75
pubmed: 26658419
J Natl Cancer Inst. 2014 Dec 07;107(1):384
pubmed: 25482530
J Neurosci. 2010 Aug 11;30(32):10784-98
pubmed: 20702708
Am J Epidemiol. 1997 Sep 15;146(6):483-94
pubmed: 9290509
BMC Med Genet. 2019 May 7;20(1):75
pubmed: 31064327
Nat Genet. 2017 May;49(5):789-794
pubmed: 28346443
Cancer Epidemiol Biomarkers Prev. 2007 Sep;16(9):1730-4
pubmed: 17855690
Genetics. 2011 Nov;189(3):1061-8
pubmed: 21840850
Cancer Epidemiol Biomarkers Prev. 2007 Nov;16(11):2491-5
pubmed: 18006942
Nucleic Acids Res. 2018 Jan 4;46(D1):D1062-D1067
pubmed: 29165669
PLoS Biol. 2018 Oct 18;16(10):e2006483
pubmed: 30335765
Anim Genet. 2021 Aug;52(4):514-517
pubmed: 33955556

Auteurs

Dong-Joo Choi (DJ)

Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.

Georgina Armstrong (G)

Epidemiology and Population Health, Stanford University School of Medicine, Stanford, CA, USA.

Brittney Lozzi (B)

Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.

Prashanth Vijayaraghavan (P)

Rady Children's Institute for Genomic Medicine, San Diego, CA, USA.

Sharon E Plon (SE)

Department of Pediatrics/Hematology-Oncology, Baylor College of Medicine, Houston, TX, USA.

Terence C Wong (TC)

Rady Children's Institute for Genomic Medicine, San Diego, CA, USA.

Eric Boerwinkle (E)

The University of Texas Health Science Center School of Public Health, Houston, TX, USA.

Donna M Muzny (DM)

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.

Hsiao-Chi Chen (HC)

Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.

Richard A Gibbs (RA)

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.

Quinn T Ostrom (QT)

Department of Neurosurgery, Duke University School of Medicine, Durham, NC, USA.

Beatrice Melin (B)

Department of Radiation Sciences, Oncology, Umeå University, Umeå, Sweden.

Benjamin Deneen (B)

Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.

Melissa L Bondy (ML)

Epidemiology and Population Health, Stanford University School of Medicine, Stanford, CA, USA.

Matthew N Bainbridge (MN)

Rady Children's Institute for Genomic Medicine, San Diego, CA, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH