Nontriplet feature of genetic code in


Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
30 05 2023
Historique:
medline: 24 5 2023
pubmed: 22 5 2023
entrez: 22 5 2023
Statut: ppublish

Résumé

The triplet nature of the genetic code is considered a universal feature of known organisms. However, frequent stop codons at internal mRNA positions in

Identifiants

pubmed: 37216548
doi: 10.1073/pnas.2221683120
pmc: PMC10235951
doi:

Substances chimiques

Codon, Terminator 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e2221683120

Subventions

Organisme : Wellcome Trust (WT)
ID : 210692/Z/18/

Références

Biol Direct. 2017 Oct 16;12(1):24
pubmed: 29037253
Cold Spring Harb Symp Quant Biol. 2001;66:217-32
pubmed: 12762024
Eur J Protistol. 2020 Jun;74:125667
pubmed: 32203852
Eur J Protistol. 2014 Aug;50(4):402-11
pubmed: 25051516
EMBO J. 2003 Nov 3;22(21):5941-50
pubmed: 14592990
Cell. 2002 Dec 13;111(6):763-6
pubmed: 12526802
Genetics. 1998 Mar;148(3):929-36
pubmed: 9539414
BMC Bioinformatics. 2011 Apr 28;12:124
pubmed: 21526987
Curr Biol. 2017 Feb 20;27(4):569-575
pubmed: 28190732
J Gen Virol. 2012 Jul;93(Pt 7):1385-1409
pubmed: 22535777
Am J Hum Genet. 2015 Sep 3;97(3):404-18
pubmed: 26299365
Mol Cell. 2004 Jan 30;13(2):157-68
pubmed: 14759362
Int J Syst Evol Microbiol. 2021 Jan;71(1):
pubmed: 33201796
J Biol Chem. 2006 Mar 17;281(11):7082-8
pubmed: 16407312
Nature. 2008 Jan 17;451(7176):359-62
pubmed: 18202663
Nat Commun. 2022 Jun 25;13(1):3631
pubmed: 35752631
EMBO J. 1988 May;7(5):1503-7
pubmed: 2457498
RNA. 2003 Dec;9(12):1422-30
pubmed: 14623998
Nature. 2022 Apr;604(7906):E16-E23
pubmed: 35444316
Curr Biol. 2014 Nov 17;24(22):R1081-2
pubmed: 25458215
Mol Cell. 2017 Jan 19;65(2):207-219
pubmed: 28107647
Nat Biotechnol. 2011 May 15;29(7):644-52
pubmed: 21572440
Bioessays. 2017 Mar;39(3):
pubmed: 28009453
Mol Cell. 2022 Oct 6;82(19):3523
pubmed: 36115343
J Eukaryot Microbiol. 2001 Jan-Feb;48(1):80-7
pubmed: 11249196
Sci Rep. 2016 Feb 19;6:21139
pubmed: 26891713
Eukaryot Cell. 2005 Dec;4(12):2098-105
pubmed: 16339727
Cell. 2016 Jul 28;166(3):691-702
pubmed: 27426948
Nucleic Acids Res. 2016 Sep 6;44(15):7007-78
pubmed: 27436286
Nucleic Acids Res. 2001 Oct 1;29(19):4079-88
pubmed: 11574691
Nat Commun. 2017 Jun 08;8:15582
pubmed: 28593994
J Mol Biol. 2019 Nov 8;431(22):4381-4407
pubmed: 31442478
J Mol Evol. 1998 Sep;47(3):238-48
pubmed: 9732450
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Nat Biotechnol. 2016 May;34(5):525-7
pubmed: 27043002
Genetics. 2003 Dec;165(4):1761-77
pubmed: 14704164
Virus Res. 2009 Feb;139(2):193-208
pubmed: 18621088
Nucleic Acids Res. 2005 Mar 14;33(5):1553-63
pubmed: 15767280
Nucleic Acids Res. 2016 Sep 19;44(16):7766-76
pubmed: 27418677
Nature. 1986 Jul 17-23;322(6076):273-5
pubmed: 3736654
J Mol Biol. 2010 Mar 26;397(2):448-56
pubmed: 20114053
EMBO J. 2000 Nov 15;19(22):6230-9
pubmed: 11080168
PLoS One. 2016 Sep 07;11(9):e0161476
pubmed: 27603699
Genome Biol. 2003;4(7):223
pubmed: 12844354
Nucleic Acids Res. 2022 May 20;50(9):5158-5170
pubmed: 35489061
Cell. 1989 May 19;57(4):537-47
pubmed: 2720781
Proc Biol Sci. 2019 Jul 24;286(1907):20190693
pubmed: 31311477
Mol Biol Evol. 2007 Aug;24(8):1586-91
pubmed: 17483113
EMBO Rep. 2002 Apr;3(4):373-7
pubmed: 11897659
Microbiol Rev. 1994 Jun;58(2):233-67
pubmed: 8078435
Proc Natl Acad Sci U S A. 1990 Apr;87(7):2516-20
pubmed: 2181440
Nat Rev Genet. 2015 Sep;16(9):517-29
pubmed: 26260261
Annu Rev Biochem. 1996;65:741-68
pubmed: 8811194
Nat Struct Mol Biol. 2017 Jan;24(1):61-68
pubmed: 27870834
J Mol Biol. 1968 Dec;38(3):367-79
pubmed: 4887876
EMBO J. 1999 Mar 15;18(6):1427-34
pubmed: 10075915
Science. 2016 Dec 2;354(6316):1106
pubmed: 27934724
Nature. 2016 Nov 3;539(7627):93-97
pubmed: 27776356
Gene. 2002 Mar 20;286(2):187-201
pubmed: 11943474
Biosystems. 2023 Feb;224:104838
pubmed: 36657560
Mol Biol Evol. 2006 Apr;23(4):756-63
pubmed: 16431850
J Biol Chem. 2015 Jul 17;290(29):17863-17878
pubmed: 25998126
PLoS One. 2019 Feb 28;14(2):e0212912
pubmed: 30818350
Nucleic Acids Res. 2002 Sep 15;30(18):4032-9
pubmed: 12235387
Nat Rev Genet. 2001 Jan;2(1):49-58
pubmed: 11253070
Science. 2003 May 30;300(5624):1439-43
pubmed: 12775843
Mol Biol Evol. 1986 Sep;3(5):418-26
pubmed: 3444411
Biol Direct. 2007 Oct 23;2:24
pubmed: 17956616
Nucleic Acids Res. 2007;35(6):1842-58
pubmed: 17332016
Nature. 1961 Dec 30;192:1227-32
pubmed: 13882203
Nature. 1979 Nov 8;282(5735):189-94
pubmed: 226894
J Mol Evol. 2008 Nov;67(5):510-6
pubmed: 18855039
Mol Cell. 2022 Oct 6;82(19):3745-3749.e2
pubmed: 36115342
Life (Basel). 2017 May 23;7(2):
pubmed: 28545255
Mol Cell Biol. 2006 Jan;26(2):438-47
pubmed: 16382136
PLoS Genet. 2021 Apr 20;17(4):e1009538
pubmed: 33878104
Proc Biol Sci. 2018 Jan 31;285(1871):
pubmed: 29367393
Sci Rep. 2016 Sep 06;6:33020
pubmed: 27597422
Mol Biol Evol. 2016 Nov;33(11):2885-2889
pubmed: 27501944
Genome Biol Evol. 2018 Mar 1;10(3):883-894
pubmed: 29608728
Nucleic Acids Res. 1995 Apr 25;23(8):1279-83
pubmed: 7753617
Genome Biol Evol. 2019 Nov 1;11(11):3218-3232
pubmed: 31665294
Sci Rep. 2021 Sep 21;11(1):18782
pubmed: 34548559
Mol Cell. 2013 Dec 12;52(5):629-42
pubmed: 24239289
Nature. 2014 Aug 21;512(7514):265-9
pubmed: 25043019
PLoS One. 2016 Nov 9;11(11):e0165442
pubmed: 27828996
BMC Biol. 2021 Dec 14;19(1):264
pubmed: 34903227
Nucleic Acids Res. 1990 Apr 11;18(7):1725-9
pubmed: 2186364
EMBO J. 1993 Aug;12(8):3315-22
pubmed: 8344267
Elife. 2022 Apr 11;11:
pubmed: 35404784
AIP Conf Proc. 2010 Jan 5;1204:17-21
pubmed: 20733932
Genetics. 2010 Aug;185(4):1535-6
pubmed: 20713743
Nucleic Acids Res. 2011 Apr;39(8):3079-92
pubmed: 21177642
RNA. 2004 Feb;10(2):221-30
pubmed: 14730021
J Mol Biol. 1981 Mar 25;147(1):195-7
pubmed: 7265238
Proc Natl Acad Sci U S A. 1990 May;87(10):3713-7
pubmed: 2187190
Cell. 1995 Jan 13;80(1):51-60
pubmed: 7813017
J Biol Chem. 2019 May 24;294(21):8630-8639
pubmed: 30992367
J Eukaryot Microbiol. 2001 Sep-Oct;48(5):575-82
pubmed: 11596922
Mol Biol Evol. 2017 Sep 1;34(9):2422-2424
pubmed: 28472384
Elife. 2021 Nov 09;10:
pubmed: 34751130
J Eukaryot Microbiol. 2005 Mar-Apr;52(2):116-22
pubmed: 15817116
Nature. 2023 Jan;613(7945):751-758
pubmed: 36631608
Bioinformatics. 2002 Aug;18(8):1046-53
pubmed: 12176827
PLoS Biol. 2013;11(1):e1001473
pubmed: 23382650
Biochimie. 1996;78(11-12):945-52
pubmed: 9150871
Nucleic Acids Res. 2016 Jul 8;44(12):5491-503
pubmed: 27257056
Curr Biol. 2016 Sep 12;26(17):2364-9
pubmed: 27593378
Bioinformatics. 2006 Oct 15;22(20):2463-5
pubmed: 16895933
Nucleic Acids Res. 1993 Nov 11;21(22):5074-8
pubmed: 7504811
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13
pubmed: 20435676
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Cell. 1990 Jul 27;62(2):339-52
pubmed: 2164889
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Mol Biol Evol. 2011 Nov;28(11):3195-211
pubmed: 21673094
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638
Nucleic Acids Res. 2019 Sep 5;47(15):8207-8223
pubmed: 31180502

Auteurs

Sofya A Gaydukova (SA)

Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow 199911, Russia.

Mikhail A Moldovan (MA)

A. A. Kharkevich Institute for Information Transmission Problems RAS, Moscow 127051, Russia.

Adriana Vallesi (A)

Laboratory of Eukaryotic Microbiology and Animal Biology, School of Biosciences and Veterinary Medicine, University of Camerino, Camerino 62032, Italy.

Stephen M Heaphy (SM)

School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.

John F Atkins (JF)

School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.
Department of Human Genetics, University of Utah, Salt Lake City, UT 84112.

Mikhail S Gelfand (MS)

A. A. Kharkevich Institute for Information Transmission Problems RAS, Moscow 127051, Russia.

Pavel V Baranov (PV)

School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.

Articles similaires

Humans Colorectal Neoplasms MicroRNAs Interferon Regulatory Factor-1 Radiation Tolerance
Proteome Amino Acids Protein Structure, Secondary Evolution, Molecular Humans
Humans Hydrophobic and Hydrophilic Interactions Neoplasms Mutation Amino Acids
Promoter Regions, Genetic Operon Escherichia coli Gene Expression Regulation, Bacterial Escherichia coli Proteins

Classifications MeSH