Boosting multiple sclerosis lesion segmentation through attention mechanism.

Attention Fully convolutional neural network In Silico Trials (IST) Lesion segmentation Magnetic resonance imaging (MRI) Medical image analysis Multiple sclerosis (MS)

Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
07 2023
Historique:
received: 19 01 2023
revised: 11 04 2023
accepted: 05 05 2023
medline: 5 6 2023
pubmed: 23 5 2023
entrez: 22 5 2023
Statut: ppublish

Résumé

Magnetic resonance imaging is a fundamental tool to reach a diagnosis of multiple sclerosis and monitoring its progression. Although several attempts have been made to segment multiple sclerosis lesions using artificial intelligence, fully automated analysis is not yet available. State-of-the-art methods rely on slight variations in segmentation architectures (e.g. U-Net, etc.). However, recent research has demonstrated how exploiting temporal-aware features and attention mechanisms can provide a significant boost to traditional architectures. This paper proposes a framework that exploits an augmented U-Net architecture with a convolutional long short-term memory layer and attention mechanism which is able to segment and quantify multiple sclerosis lesions detected in magnetic resonance images. Quantitative and qualitative evaluation on challenging examples demonstrated how the method outperforms previous state-of-the-art approaches, reporting an overall Dice score of 89% and also demonstrating robustness and generalization ability on never seen new test samples of a new dedicated under construction dataset.

Identifiants

pubmed: 37216775
pii: S0010-4825(23)00486-9
doi: 10.1016/j.compbiomed.2023.107021
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

107021

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest All authors have participated in (a) conception and design, or analysis and interpretation of the data; (b) drafting the article or revising it critically for important intellectual content; and (c) approval of the final version. This manuscript has not been submitted to, nor is under review at, another journal or other publishing venue. The authors have no affiliation with any organization with a direct or indirect financial interest in the subject matter discussed in the manuscript.

Auteurs

Alessia Rondinella (A)

Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy. Electronic address: alessia.rondinella@unicampus.it.

Elena Crispino (E)

Department of Biomedical and Biotechnological Sciences, University of Catania, Via Santa Sofia 97, Catania, 95125, Italy.

Francesco Guarnera (F)

Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.

Oliver Giudice (O)

Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.

Alessandro Ortis (A)

Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.

Giulia Russo (G)

Department of Drug and Health Sciences, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.

Clara Di Lorenzo (C)

UOC Radiologia, ARNAS Garibaldi, P.zza S. Maria di Gesù, Catania, 95124, Italy.

Davide Maimone (D)

Centro Sclerosi Multipla, UOC Neurologia, ARNAS Garibaldi, P.zza S. Maria di Gesù, Catania, 95124, Italy.

Francesco Pappalardo (F)

Department of Drug and Health Sciences, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.

Sebastiano Battiato (S)

Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.

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