Abundant dsRNA picobirnaviruses show little geographic or host association in terrestrial systems.


Journal

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases
ISSN: 1567-7257
Titre abrégé: Infect Genet Evol
Pays: Netherlands
ID NLM: 101084138

Informations de publication

Date de publication:
08 2023
Historique:
received: 03 04 2023
revised: 08 05 2023
accepted: 25 05 2023
medline: 21 6 2023
pubmed: 1 6 2023
entrez: 31 5 2023
Statut: ppublish

Résumé

Picobirnaviruses are double-stranded RNA viruses known from a wide range of host species and locations but with unknown pathogenicity and host relationships. Here, we examined the diversity of picobirnaviruses from cattle and gorillas within and around Bwindi Impenetrable Forest National Park (BIFNP), Uganda, where wild and domesticated animals and humans live in relatively close contact. We use metagenomic sequencing with bioinformatic analyses to examine genetic diversity. We compared our findings to global Picobirnavirus diversity using clustering-based analyses. Picobirnavirus diversity at Bwindi was high, with 14 near-complete RdRp and 15 capsid protein sequences, and 497 new partial viral sequences recovered from 44 gorilla samples and 664 from 16 cattle samples. Sequences were distributed throughout a phylogenetic tree of globally derived picobirnaviruses. The relationship with Picobirnavirus diversity and host taxonomy follows a similar pattern to the global dataset, generally lacking pattern with either host or geography.

Identifiants

pubmed: 37257800
pii: S1567-1348(23)00054-0
doi: 10.1016/j.meegid.2023.105456
pii:
doi:

Substances chimiques

RNA, Double-Stranded 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

105456

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Matthew A Knox (MA)

School of Veterinary Science, Massey University, New Zealand. Electronic address: m.knox@massey.ac.nz.

Janelle Wierenga (J)

School of Veterinary Science, Massey University, New Zealand.

Patrick J Biggs (PJ)

School of Veterinary Science, Massey University, New Zealand; School of Natural Sciences, Massey University, New Zealand.

Kristene Gedye (K)

School of Veterinary Science, Massey University, New Zealand.

Valter Almeida (V)

School of Veterinary Science, Massey University, New Zealand.

Richard Hall (R)

Ministry for Primary Industries, New Zealand.

Gladys Kalema-Zikusoka (G)

Conservation Through Public Health, Uganda.

Stephen Rubanga (S)

Conservation Through Public Health, Uganda.

Alex Ngabirano (A)

Bwindi Development Network, Uganda.

Willy Valdivia-Granda (W)

Orion Integrated Biosciences, USA.

David T S Hayman (DTS)

School of Veterinary Science, Massey University, New Zealand.

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Classifications MeSH