Recent Advances in Computer-Aided Structure-Based Drug Design on Ion Channels.

drug design ion channel structure ion channels ligand docking molecular dynamics virtual screening

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
25 May 2023
Historique:
received: 19 04 2023
revised: 16 05 2023
accepted: 22 05 2023
medline: 12 6 2023
pubmed: 10 6 2023
entrez: 10 6 2023
Statut: epublish

Résumé

Ion channels play important roles in fundamental biological processes, such as electric signaling in cells, muscle contraction, hormone secretion, and regulation of the immune response. Targeting ion channels with drugs represents a treatment option for neurological and cardiovascular diseases, muscular degradation disorders, and pathologies related to disturbed pain sensation. While there are more than 300 different ion channels in the human organism, drugs have been developed only for some of them and currently available drugs lack selectivity. Computational approaches are an indispensable tool for drug discovery and can speed up, especially, the early development stages of lead identification and optimization. The number of molecular structures of ion channels has considerably increased over the last ten years, providing new opportunities for structure-based drug development. This review summarizes important knowledge about ion channel classification, structure, mechanisms, and pathology with the main focus on recent developments in the field of computer-aided, structure-based drug design on ion channels. We highlight studies that link structural data with modeling and chemoinformatic approaches for the identification and characterization of new molecules targeting ion channels. These approaches hold great potential to advance research on ion channel drugs in the future.

Identifiants

pubmed: 37298178
pii: ijms24119226
doi: 10.3390/ijms24119226
pmc: PMC10253043
pii:
doi:

Substances chimiques

Ion Channels 0

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Références

Nature. 2003 May 1;423(6935):42-8
pubmed: 12721619
Front Cell Neurosci. 2019 Feb 08;13:37
pubmed: 30800059
J Biol Chem. 2022 Mar;298(3):101731
pubmed: 35176281
Acta Physiol (Oxf). 2018 Jul;223(3):e13038
pubmed: 29352512
Am J Physiol Cell Physiol. 2012 Oct 1;303(7):C699-710
pubmed: 22843794
J Chem Inf Model. 2013 May 24;53(5):1179-90
pubmed: 23621564
Molecules. 2022 Nov 25;27(23):
pubmed: 36500328
J Neurosci. 2008 Feb 6;28(6):1356-65
pubmed: 18256255
J Chem Inf Model. 2011 Oct 24;51(10):2449-54
pubmed: 21978256
Bioinformatics. 2023 Jan 1;39(1):
pubmed: 36322820
Hum Genomics. 2011 Jan;5(2):108-16
pubmed: 21296744
Neuron. 2000 Apr;26(1):13-25
pubmed: 10798388
Front Pharmacol. 2021 Nov 10;12:777607
pubmed: 34858192
Pharmaceutics. 2022 Nov 22;14(12):
pubmed: 36559057
Chem Biol Drug Des. 2019 Jan;93(1):12-20
pubmed: 30187647
J Cheminform. 2019 Jul 10;11(1):47
pubmed: 31292807
Methods. 2009 Oct;49(2):174-80
pubmed: 19398010
Front Pharmacol. 2017 Dec 04;8:889
pubmed: 29255418
Front Cell Neurosci. 2021 Apr 09;15:662971
pubmed: 33897377
Future Med Chem. 2011 Apr;3(6):735-50
pubmed: 21554079
Channels (Austin). 2015;9(6):360-6
pubmed: 26646477
BMC Bioinformatics. 2021 Nov 26;22(1):567
pubmed: 34836495
CNS Neurosci Ther. 2018 Jan;24(1):18-28
pubmed: 29105300
Cochrane Database Syst Rev. 2006 Apr 19;(2):CD001169
pubmed: 16625539
J Chem Inf Model. 2011 Aug 22;51(8):1831-9
pubmed: 21728295
Trends Endocrinol Metab. 2017 May;28(5):377-387
pubmed: 28262438
Bioorg Med Chem Lett. 2009 Apr 15;19(8):2299-304
pubmed: 19282171
Curr Top Med Chem. 2014;14(11):1399-415
pubmed: 24805060
Exp Biol Med (Maywood). 2018 Jun;243(10):852-863
pubmed: 29806494
J Chem Inf Model. 2022 Nov 28;62(22):5550-5567
pubmed: 36327102
Front Psychiatry. 2020 Oct 23;11:554899
pubmed: 33192668
Neuron. 2019 Nov 6;104(3):501-511.e6
pubmed: 31488329
Physiol Rev. 2002 Apr;82(2):503-68
pubmed: 11917096
Mol Inform. 2016 Dec;35(11-12):541-548
pubmed: 27870243
Science. 2021 Aug 20;373(6557):871-876
pubmed: 34282049
Front Biosci (Landmark Ed). 2018 Jan 1;23(1):43-64
pubmed: 28930537
Curr Biol. 2007 Oct 23;17(20):R885-7
pubmed: 17956748
Commun Biol. 2021 Dec 1;4(1):1347
pubmed: 34853399
Neurotherapeutics. 2007 Apr;4(2):184-98
pubmed: 17395128
Front Immunol. 2018 Feb 07;9:174
pubmed: 29467763
J Med Chem. 2015 Sep 24;58(18):7093-118
pubmed: 25927480
Br J Pharmacol. 2011 Nov;164 Suppl 1:S1-324
pubmed: 22040146
Front Oncol. 2019 Sep 24;9:933
pubmed: 31612103
Nature. 2018 Mar 15;555(7696):397-401
pubmed: 29513651
ACS Cent Sci. 2020 Jun 24;6(6):939-949
pubmed: 32607441
Q Rev Biophys. 2010 Nov;43(4):449-99
pubmed: 20849671
Front Cell Dev Biol. 2020 Dec 14;8:611853
pubmed: 33381507
J Med Chem. 2012 Jul 26;55(14):6582-94
pubmed: 22716043
Trends Genet. 1997 Sep;13(9):375-6
pubmed: 9287494
Int J Mol Sci. 2020 Jan 03;21(1):
pubmed: 31947863
Biochim Biophys Acta. 2016 Jul;1858(7 Pt B):1733-40
pubmed: 26891818
Biomed Pharmacother. 2022 Aug;152:113262
pubmed: 35691156
Cancers (Basel). 2022 Sep 29;14(19):
pubmed: 36230692
Proteins. 2002 Jun 1;47(4):409-43
pubmed: 12001221
J Chem Theory Comput. 2018 Jul 10;14(7):3859-3869
pubmed: 29768913
Int J Mol Sci. 2021 Apr 23;22(9):
pubmed: 33922714
Nat Rev Drug Discov. 2017 Jan;16(1):19-34
pubmed: 27910877
Chem Biol Drug Des. 2022 Jul;100(1):136-153
pubmed: 35426249
Neuron. 2018 Sep 19;99(6):1129-1143
pubmed: 30236283
RSC Adv. 2022 Sep 2;12(38):25010-25024
pubmed: 36199882
Cells. 2021 Apr 06;10(4):
pubmed: 33917551
Nat Rev Drug Discov. 2019 Jan;18(1):41-58
pubmed: 30310233
ACS Chem Biol. 2018 Aug 17;13(8):2033-2039
pubmed: 29767950
Cell Mol Life Sci. 1999 Aug 15;55(10):1278-303
pubmed: 10487207
Mol Pharmacol. 2020 Nov;98(5):540-547
pubmed: 32938719
Curr Opin Neurobiol. 2011 Apr;21(2):283-90
pubmed: 21349697
J Comput Chem. 2022 Apr 15;43(10):692-703
pubmed: 35218219
Biochim Biophys Acta Biomembr. 2017 Sep;1859(9 Pt B):1615-1628
pubmed: 28432033
Phys Chem Chem Phys. 2010 Oct 28;12(40):12899-908
pubmed: 20730182
IEEE Trans Nanobioscience. 2005 Mar;4(1):34-48
pubmed: 15816170
Pharmaceuticals (Basel). 2022 May 23;15(5):
pubmed: 35631472
Front Microbiol. 2022 Jul 04;13:889374
pubmed: 35859744
Front Cell Neurosci. 2014 May 09;8:125
pubmed: 24847210
Nat Commun. 2018 Jun 13;9(1):2307
pubmed: 29899501
Wiley Interdiscip Rev Comput Mol Sci. 2015 Nov-Dec;5(6):405-424
pubmed: 27110292
Anal Chem. 2021 Feb 2;93(4):1866-1879
pubmed: 33439619
Pharmacol Rev. 2010 Sep;62(3):405-96
pubmed: 20716669
Br J Pharmacol. 2022 Jul;179(14):3576-3591
pubmed: 32959389
J Chem Inf Model. 2015 Mar 23;55(3):475-82
pubmed: 25647463
J Med Chem. 2005 Jul 28;48(15):4705-45
pubmed: 16033252
Nucleic Acids Res. 2003 Jul 1;31(13):3381-5
pubmed: 12824332
Cell Mol Life Sci. 2015 Oct;72(19):3677-93
pubmed: 26070303
Pharmaceutics. 2022 Sep 02;14(9):
pubmed: 36145607
Front Pharmacol. 2023 Jan 12;13:1094607
pubmed: 36712671
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D668-72
pubmed: 16381955
Br J Pharmacol. 2022 Jul;179(14):3628-3644
pubmed: 32959886
Annu Rev Biochem. 1995;64:493-531
pubmed: 7574491
Physiol Rev. 2012 Jul;92(3):1393-478
pubmed: 22988594
Front Pharmacol. 2022 Jan 14;12:814066
pubmed: 35095528
Epilepsia. 2014 Jan;55 Suppl 1:13-5
pubmed: 24400692
J Chem Inf Model. 2022 Jul 25;62(14):3291-3306
pubmed: 35793555
Int J Mol Sci. 2018 Mar 07;19(3):
pubmed: 29518895
Acta Crystallogr D Struct Biol. 2023 Jan 1;79(Pt 1):10-21
pubmed: 36601803
J Am Chem Soc. 2022 Sep 7;144(35):16101-16117
pubmed: 36006801
Nat Protoc. 2022 Mar;17(3):672-697
pubmed: 35121854
Curr Med Chem. 2013;20(10):1241-85
pubmed: 23409712
Nucleic Acids Res. 2012 Jan;40(Database issue):D1100-7
pubmed: 21948594
J Mol Biol. 2000 Nov 10;303(5):797-811
pubmed: 11061976
Immunity. 2017 Jul 18;47(1):15-31
pubmed: 28723547
Molecules. 2022 Jul 18;27(14):
pubmed: 35889440
Nat Med. 2006 Jul;12(7):780-4
pubmed: 16829947
Curr Comput Aided Drug Des. 2011 Jun;7(2):146-57
pubmed: 21534921
Cell Physiol Biochem. 2021 Mar 3;55(S3):14-45
pubmed: 33656309
Nucleic Acids Res. 2017 Jan 4;45(D1):D945-D954
pubmed: 27899562
J Gen Physiol. 1996 May;107(5):643-58
pubmed: 8740377
Front Pharmacol. 2016 May 10;7:121
pubmed: 27242528
Proc Natl Acad Sci U S A. 2022 Nov 8;119(45):e2207067119
pubmed: 36763058
J Chem Inf Model. 2022 Jun 27;62(12):3008-3022
pubmed: 35696534
J Med Chem. 2013 Feb 14;56(3):593-624
pubmed: 23121096
Front Mol Neurosci. 2022 Mar 23;15:848642
pubmed: 35401105
Physiol Rev. 2011 Jul;91(3):1009-22
pubmed: 21742794
Biochemistry. 2018 Jan 23;57(3):267-276
pubmed: 29037031
Front Pharmacol. 2019 May 24;10:549
pubmed: 31178728
Cell. 2021 Apr 15;184(8):2121-2134.e13
pubmed: 33735609
Commun Biol. 2021 Feb 9;4(1):174
pubmed: 33564124
Cell. 2017 Apr 20;169(3):422-430.e10
pubmed: 28431243
Int J Mol Sci. 2021 May 01;22(9):
pubmed: 34062742
J Cell Mol Med. 2023 Jan;27(2):266-276
pubmed: 36573431
J Cheminform. 2014 Apr 16;6:14
pubmed: 24739488
Biophys J. 2021 Feb 16;120(4):738-748
pubmed: 33476597
J Chem Theory Comput. 2019 Apr 9;15(4):2433-2443
pubmed: 30811931
J Chem Inf Model. 2011 Feb 28;51(2):386-97
pubmed: 21192670
Chem Rev. 2012 Dec 12;112(12):6319-33
pubmed: 23151230
Methods. 2016 Feb 15;95:78-85
pubmed: 26638773
Pharmacol Rev. 2013 Dec 31;66(1):334-95
pubmed: 24381236
Curr Med Chem. 2019;26(20):3792-3811
pubmed: 29637850
J Mol Biol. 2021 Aug 20;433(17):166995
pubmed: 33887333
J Med Chem. 2007 Jan 11;50(1):83-93
pubmed: 17201412
Front Pharmacol. 2013 Jun 21;4:78
pubmed: 23801963
Front Pharmacol. 2022 Sep 28;13:976903
pubmed: 36249789
Mol Inform. 2015 Oct;34(10):698-701
pubmed: 27490970
Nature. 2009 Dec 10;462(7274):745-56
pubmed: 19946266
Structure. 2013 Oct 8;21(10):1735-42
pubmed: 24035711
Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082
pubmed: 29126136
Structure. 2020 Jan 7;28(1):130-139.e2
pubmed: 31753620
Biomolecules. 2020 Mar 18;10(3):
pubmed: 32197322
Science. 1998 Apr 3;280(5360):69-77
pubmed: 9525859
Front Physiol. 2022 Oct 05;13:1019028
pubmed: 36277193
Nat Rev Drug Discov. 2009 Dec;8(12):982-1001
pubmed: 19949402
J Gen Physiol. 2019 Feb 4;151(2):186-199
pubmed: 30587506
J Chem Theory Comput. 2013 Jan 8;9(1):687-97
pubmed: 26589065
Interdiscip Sci. 2019 Jun;11(2):320-328
pubmed: 30877639
Comput Biol Med. 2023 Feb;153:106491
pubmed: 36599209
Cell Res. 2021 Jan;31(1):52-61
pubmed: 32884139
Proc Natl Acad Sci U S A. 2011 Nov 1;108(44):18114-9
pubmed: 22025699
J Cell Physiol. 2019 Jun;234(6):7856-7873
pubmed: 30515811

Auteurs

Palina Pliushcheuskaya (P)

Institute for Drug Discovery, Medical Faculty, University of Leipzig, Brüderstr. 34, D-04103 Leipzig, Germany.

Georg Künze (G)

Institute for Drug Discovery, Medical Faculty, University of Leipzig, Brüderstr. 34, D-04103 Leipzig, Germany.
Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstr. 16-18, D-04107 Leipzig, Germany.

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