Utilization of DNA and 2D metal oxide interaction for an optical biosensor.


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
05 Jul 2023
Historique:
medline: 6 7 2023
pubmed: 23 6 2023
entrez: 23 6 2023
Statut: epublish

Résumé

The efficient monitoring and early detection of viruses may provide essential information about diseases. In this work, we have highlighted the interaction between DNA and a two-dimensional (2D) metal oxide for developing biosensors for further detection of viral infections. Spectroscopic measurements have been used to probe the efficient interactions between single-stranded DNA (ssDNA) and the 2D metal oxide and make them ideal candidates for detecting viral infections. We have also used fully atomistic molecular dynamics (MD) simulation to give a microscopic understanding of the experimentally observed ssDNA-metal oxide interaction. The adsorption of ssDNA on the inorganic surface was found to be driven by favourable enthalpy change, and 5'-guanine was identified as the interacting nucleotide base. Additionally, the

Identifiants

pubmed: 37350266
doi: 10.1039/d3cp01402a
doi:

Substances chimiques

DNA 9007-49-2
DNA, Single-Stranded 0
Oxides 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

17143-17153

Auteurs

Partha Kumbhakar (P)

Department of Metallurgical and Materials Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. chandra.tiwary@metal.iitkgp.ac.in.

Indrani Das Jana (I)

School of Bioscience, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. arin.cal@gmail.com.

Subhadip Basu (S)

Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India. maiti@iisc.ac.in.

Sandip Mandal (S)

Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India. maiti@iisc.ac.in.

Saptarshi Banerjee (S)

School of Bioscience, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. arin.cal@gmail.com.

Subhanita Roy (S)

School of Bioscience, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. arin.cal@gmail.com.

Chinmayee Chowde Gowda (CC)

School of Nano Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Anyesha Chakraborty (A)

School of Nano Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Ashim Pramanik (A)

Department of Metallurgical and Materials Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. chandra.tiwary@metal.iitkgp.ac.in.
Nanoscience Laboratory, Department of Physics, National Institute of Technology Durgapur, 713209, India.

Pooja Lahiri (P)

School of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Basudev Lahiri (B)

Department of Electronics and Electrical Communication Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Amreesh Chandra (A)

Department of Physics, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Pathik Kumbhakar (P)

Nanoscience Laboratory, Department of Physics, National Institute of Technology Durgapur, 713209, India.

Arindam Mondal (A)

School of Bioscience, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. arin.cal@gmail.com.

Prabal K Maiti (PK)

Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India. maiti@iisc.ac.in.

Chandra Sekhar Tiwary (CS)

Department of Metallurgical and Materials Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India. chandra.tiwary@metal.iitkgp.ac.in.

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Classifications MeSH