Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach.
UNRES force field
coarse graining
falling cat motion
molecular dynamics
molecular motors
Journal
Biomolecules
ISSN: 2218-273X
Titre abrégé: Biomolecules
Pays: Switzerland
ID NLM: 101596414
Informations de publication
Date de publication:
05 06 2023
05 06 2023
Historique:
received:
05
05
2023
revised:
26
05
2023
accepted:
30
05
2023
medline:
29
6
2023
pubmed:
28
6
2023
entrez:
28
6
2023
Statut:
epublish
Résumé
Molecular motors are essential for the movement and transportation of macromolecules in living organisms. Among them, rotatory motors are particularly efficient. In this study, we investigated the long-term dynamics of the designed left-handed alpha/alpha toroid (PDB: 4YY2), the RBM2 flagellum protein ring from
Identifiants
pubmed: 37371521
pii: biom13060941
doi: 10.3390/biom13060941
pmc: PMC10296118
pii:
doi:
Substances chimiques
Proteins
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Références
Phys Rev Lett. 2012 Oct 19;109(16):160401
pubmed: 23215056
J Chem Theory Comput. 2009 Mar 10;5(3):627-640
pubmed: 20161452
J Mol Model. 2014 Aug;20(8):2306
pubmed: 25024008
Prog Mol Biol Transl Sci. 2020;170:73-122
pubmed: 32145953
J Comput Chem. 2008 Aug;29(11):1859-65
pubmed: 18351591
J Chem Inf Model. 2015 Sep 28;55(9):2050-70
pubmed: 26263302
J Phys Chem B. 2007 Jan 11;111(1):260-85
pubmed: 17201450
Nature. 2015 Dec 24;528(7583):585-8
pubmed: 26675735
Cell. 2021 May 13;184(10):2665-2679.e19
pubmed: 33882274
Q Rev Biophys. 2015 Nov;48(4):395-403
pubmed: 26537397
Science. 2005 Apr 29;308(5722):654-9
pubmed: 15802565
Science. 2019 Jul 19;365(6450):272-276
pubmed: 31320538
J Phys Chem B. 2005 Jul 21;109(28):13798-810
pubmed: 16852728
Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2746-51
pubmed: 25730883
Nat Protoc. 2008;3(12):1832-47
pubmed: 18989261
J Comput Chem. 2008 Jul 15;29(9):1460-5
pubmed: 18196502
J Comput Chem. 2019 Sep 30;40(25):2164-2178
pubmed: 31037754
J Phys Chem B. 2019 Sep 19;123(37):7829-7839
pubmed: 31454484
Rep Prog Phys. 2012 Dec;75(12):126001
pubmed: 23168354
J Chem Phys. 2006 May 7;124(17):174903
pubmed: 16689600
J Chem Phys. 2017 Mar 28;146(12):124106
pubmed: 28388107
Nucleic Acids Res. 2003 Jul 1;31(13):3370-4
pubmed: 12824330
J Comput Chem. 2023 Feb 5;44(4):602-625
pubmed: 36378078
J Phys Chem B. 2005 Jul 21;109(28):13785-97
pubmed: 16852727
J Mol Graph Model. 2021 Nov;108:108008
pubmed: 34419932
Annu Rev Biochem. 2004;73:705-48
pubmed: 15189157
J Phys Chem B. 2021 May 20;125(19):4931-4954
pubmed: 33982567
Nat Commun. 2021 Jul 22;12(1):4469
pubmed: 34294704
J Am Chem Soc. 2021 Apr 21;143(15):5569-5591
pubmed: 33830744
Chem Rev. 2020 Jan 8;120(1):1-4
pubmed: 31910626
Biopolymers. 1983 Dec;22(12):2577-637
pubmed: 6667333
Biomolecules. 2021 Sep 11;11(9):
pubmed: 34572559
J Phys Chem Lett. 2018 Feb 1;9(3):513-520
pubmed: 29329502
Nucleic Acids Res. 2015 Jan;43(Database issue):D364-8
pubmed: 25352545
J Cell Sci. 2012 Apr 1;125(Pt 7):1627-32
pubmed: 22566666
Methods Mol Biol. 2022;2376:399-416
pubmed: 34845623
Science. 2022 Apr 22;376(6591):383-390
pubmed: 35446645
Phys Rev Lett. 2012 Oct 19;109(16):160402
pubmed: 23215057
J Chem Phys. 2019 Apr 21;150(15):155104
pubmed: 31005069
Nat Microbiol. 2020 Jul;5(7):966-975
pubmed: 32284565
Bioinformatics. 2016 Nov 1;32(21):3270-3278
pubmed: 27378298
Comput Struct Biotechnol J. 2019 Jul 31;17:1075-1081
pubmed: 31452860
Biopolymers. 2016 Aug;105(8):476-82
pubmed: 27120111