Vibrational Spectroscopy of Phytochromes.
IR
Raman
photoswitch
phytochrome
spectroscopy
tetrapyrrole
Journal
Biomolecules
ISSN: 2218-273X
Titre abrégé: Biomolecules
Pays: Switzerland
ID NLM: 101596414
Informations de publication
Date de publication:
17 06 2023
17 06 2023
Historique:
received:
31
05
2023
revised:
12
06
2023
accepted:
14
06
2023
medline:
29
6
2023
pubmed:
28
6
2023
entrez:
28
6
2023
Statut:
epublish
Résumé
Phytochromes are biological photoswitches that translate light into physiological functions. Spectroscopic techniques are essential tools for molecular research into these photoreceptors. This review is directed at summarizing how resonance Raman and IR spectroscopy contributed to an understanding of the structure, dynamics, and reaction mechanism of phytochromes, outlining the substantial experimental and theoretical challenges and describing the strategies to master them. It is shown that the potential of the various vibrational spectroscopic techniques can be most efficiently exploited using integral approaches via a combination of theoretical methods as well as other experimental techniques.
Identifiants
pubmed: 37371587
pii: biom13061007
doi: 10.3390/biom13061007
pmc: PMC10296107
pii:
doi:
Substances chimiques
Phytochrome
11121-56-5
Types de publication
Journal Article
Review
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
Références
Photochem Photobiol Sci. 2023 Apr;22(4):919-930
pubmed: 36653574
Curr Opin Struct Biol. 2019 Aug;57:39-46
pubmed: 30831380
Annu Rev Biophys. 2018 May 20;47:291-313
pubmed: 29539272
Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12571-6
pubmed: 17640891
Sci Rep. 2016 Jun 22;6:28444
pubmed: 27329837
Photochem Photobiol. 2017 May;93(3):724-732
pubmed: 28500706
Proc Natl Acad Sci U S A. 2020 Feb 4;117(5):2432-2440
pubmed: 31964827
Biochim Biophys Acta. 1997 Jul 18;1340(2):253-67
pubmed: 9252112
Science. 2009 May 8;324(5928):804-7
pubmed: 19423828
Biochemistry. 2003 Oct 21;42(41):12050-5
pubmed: 14556636
Biochemistry. 1980 Nov 11;19(23):5421-8
pubmed: 7448177
J Phys Chem B. 2011 Feb 10;115(5):1220-31
pubmed: 21192668
Front Mol Biosci. 2015 Jul 07;2:38
pubmed: 26217670
J Am Chem Soc. 2012 Jan 25;134(3):1408-11
pubmed: 22229806
J Am Chem Soc. 2007 Jan 10;129(1):126-32
pubmed: 17199291
J Am Chem Soc. 2006 Oct 18;128(41):13356-7
pubmed: 17031938
J Am Chem Soc. 2010 Sep 22;132(37):12811-3
pubmed: 20806897
Biochemistry. 2020 Mar 10;59(9):1023-1037
pubmed: 32073262
Phys Chem Chem Phys. 2022 May 18;24(19):11967-11978
pubmed: 35527718
Biochemistry. 1996 Aug 20;35(33):10793-9
pubmed: 8718870
Photochem Photobiol. 2017 May;93(3):703-712
pubmed: 28500700
Biochemistry. 1979 Oct 30;18(22):4886-900
pubmed: 508721
Biochemistry. 2014 May 20;53(19):3118-30
pubmed: 24766217
Front Mol Biosci. 2015 Jul 10;2:37
pubmed: 26217669
Biochemistry. 1992 Sep 1;31(34):7957-62
pubmed: 1510982
J Biol Chem. 2008 Jul 25;283(30):21251-66
pubmed: 18480055
J Biol Chem. 2008 Dec 12;283(50):34605-14
pubmed: 18931394
Chemphyschem. 2010 Apr 26;11(6):1207-14
pubmed: 20333618
Biophys J. 2010 Jul 21;99(2):595-9
pubmed: 20643079
Proc Natl Acad Sci U S A. 2022 Aug 2;119(31):e2206400119
pubmed: 35905324
Biol Chem. 1999 Jul-Aug;380(7-8):931-5
pubmed: 10494844
Nat New Biol. 1971 Sep 29;233(39):149-52
pubmed: 4940442
Biochemistry. 2001 Sep 25;40(38):11460-71
pubmed: 11560494
Biochemistry. 2001 Dec 11;40(49):14952-9
pubmed: 11732915
Biophys J. 2007 Sep 15;93(6):1885-94
pubmed: 17513350
J Phys Chem A. 2006 Sep 14;110(36):10564-74
pubmed: 16956238
Chem Soc Rev. 2008 May;37(5):937-45
pubmed: 18443679
Nat Chem. 2015 May;7(5):423-30
pubmed: 25901821
Annu Rev Plant Biol. 2006;57:837-58
pubmed: 16669784
Chemphyschem. 2018 Mar 5;19(5):566-570
pubmed: 29327408
Chemphyschem. 2010 Apr 26;11(6):1265-74
pubmed: 20376872
J Biol Chem. 2014 Jun 20;289(25):17747-57
pubmed: 24817121
J Mol Biol. 2016 Sep 25;428(19):3702-20
pubmed: 27107635
Nat Plants. 2020 May;6(5):581-588
pubmed: 32366982
Biophys J. 2012 Feb 8;102(3):709-17
pubmed: 22325295
J Phys Chem Lett. 2014 Aug 7;5(15):2512-2515
pubmed: 25126387
Photochem Photobiol. 1988 Aug;48(2):129-36
pubmed: 3222324
J Phys Chem B. 2019 Apr 18;123(15):3242-3247
pubmed: 30913882
Biophys J. 2008 Aug;95(3):1256-67
pubmed: 18390618
Biochemistry. 1994 Jan 11;33(1):153-8
pubmed: 8286333
Biochemistry. 1991 Nov 5;30(44):10693-700
pubmed: 1657153
J Biol Chem. 2007 Jan 19;282(3):2116-23
pubmed: 17121858
J Phys Chem A. 2005 Mar 17;109(10):2139-50
pubmed: 16838985
Biochemistry. 2014 Jan 14;53(1):20-9
pubmed: 24328165
Sci Rep. 2016 Oct 19;6:35279
pubmed: 27756898
Biochemistry. 2013 Jul 23;52(29):4871-80
pubmed: 23808413
Photochem Photobiol. 2011 Jan-Feb;87(1):160-73
pubmed: 21091956
Photochem Photobiol Sci. 2008 Oct;7(10):1159-67
pubmed: 18846279
FEBS Lett. 1997 Sep 1;414(1):23-6
pubmed: 9305725
Structure. 2013 Jan 8;21(1):88-97
pubmed: 23219880
Chemphyschem. 2016 Feb 3;17(3):369-74
pubmed: 26630441
J Phys Chem A. 2011 Apr 28;115(16):3778-86
pubmed: 21192725
FEBS Lett. 2017 May;591(9):1258-1265
pubmed: 28376244
J Am Chem Soc. 2018 Oct 3;140(39):12396-12404
pubmed: 30183281
J Chem Phys. 2023 Feb 28;158(8):085103
pubmed: 36859103
J Phys Chem B. 2005 Nov 3;109(43):20597-604
pubmed: 16853666
J Biol Chem. 2013 Jun 7;288(23):16800-16814
pubmed: 23603902
Biochemistry. 2011 Mar 22;50(11):1894-900
pubmed: 21280675
Biochemistry. 2009 Jul 14;48(27):6305-17
pubmed: 19496558
Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14715-20
pubmed: 18799746
Proc Natl Acad Sci U S A. 1982 Aug;79(16):4972-6
pubmed: 6956906
Photochem Photobiol. 2009 Jan-Feb;85(1):239-49
pubmed: 18764898
Nature. 1997 Apr 17;386(6626):663
pubmed: 9109482
Angew Chem Int Ed Engl. 2008;47(25):4753-5
pubmed: 18484576
Acc Chem Res. 2007 Apr;40(4):258-66
pubmed: 17279729
Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):918-23
pubmed: 23256156
J Phys Chem B. 2022 Feb 3;126(4):813-821
pubmed: 35076228
J Phys Chem B. 2021 Dec 23;125(50):13696-13709
pubmed: 34843240
Nat Biotechnol. 2011 Jul 17;29(8):757-61
pubmed: 21765402
Biochemistry. 2015 Apr 28;54(16):2581-600
pubmed: 25843271
Photochem Photobiol. 2017 May;93(3):642-655
pubmed: 28500698
Biochemistry. 2019 Aug 20;58(33):3504-3519
pubmed: 31348653
Biochemistry. 1997 Oct 28;36(43):13389-95
pubmed: 9341232
Biophys J. 2013 Oct 15;105(8):1756-66
pubmed: 24138851
Nature. 2014 May 8;509(7499):245-248
pubmed: 24776794
J Biol Chem. 2009 Oct 23;284(43):29757-72
pubmed: 19671704
J Am Chem Soc. 2013 Jul 31;135(30):11181-92
pubmed: 23808481
Chemphyschem. 2007 Aug 6;8(11):1657-63
pubmed: 17614346
J Biol Chem. 2005 Oct 7;280(40):34358-64
pubmed: 16061486
Chem Rev. 2020 Apr 8;120(7):3577-3630
pubmed: 31814387
Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15229-34
pubmed: 18832155
J Biol Chem. 2007 Apr 20;282(16):12298-309
pubmed: 17322301
Phys Chem Chem Phys. 2018 Jul 11;20(27):18216-18225
pubmed: 29938729
FEBS Lett. 1989 Nov 20;258(1):1-4
pubmed: 2591526
Plant Physiol. 2021 Oct 5;187(2):632-645
pubmed: 34608946
Nat Commun. 2018 Nov 21;9(1):4912
pubmed: 30464203
Proc Natl Acad Sci U S A. 1983 Oct;80(20):6244-8
pubmed: 16593380
Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14709-14
pubmed: 18799745
J Biol Chem. 2013 Nov 1;288(44):31738-51
pubmed: 24036118
Biochemistry. 1995 Aug 22;34(33):10497-507
pubmed: 7654704
Photochem Photobiol Sci. 2022 Apr;21(4):471-491
pubmed: 35411484
Biochim Biophys Acta. 1972 May 18;263(3):830-3
pubmed: 5034222
Phys Chem Chem Phys. 2021 Mar 11;23(9):5615-5628
pubmed: 33656023
Biochemistry. 2021 Oct 12;60(40):2967-2977
pubmed: 34570488
J Biol Chem. 2008 May 2;283(18):12212-26
pubmed: 18192276
Phys Chem Chem Phys. 2021 May 5;23(17):10267-10273
pubmed: 33899887
Biochemistry. 2020 Aug 18;59(32):2909-2915
pubmed: 32786403
J Am Chem Soc. 2004 Dec 29;126(51):16734-5
pubmed: 15612706
Nat Chem. 2022 Jul;14(7):823-830
pubmed: 35577919
J Pharm Biomed Anal. 1997 Jun;15(9-10):1319-24
pubmed: 9226559
J Biol Chem. 2016 Sep 23;291(39):20674-91
pubmed: 27466363
Biochemistry. 1990 Dec 18;29(50):11141-6
pubmed: 2271702
Proc Natl Acad Sci U S A. 1990 Aug;87(15):5903-6
pubmed: 11607094
FEBS Lett. 2000 Oct 6;482(3):252-6
pubmed: 11024470
Nature. 2005 Nov 17;438(7066):325-31
pubmed: 16292304
J Phys Chem B. 2009 Dec 24;113(51):16354-64
pubmed: 19950906
Biophys J. 2008 Apr 15;94(8):3189-97
pubmed: 18192363
J Chem Phys. 2020 Dec 28;153(24):245101
pubmed: 33380114
Mol Plant. 2015 Apr;8(4):540-51
pubmed: 25670340
Sci Rep. 2019 Feb 12;9(1):1866
pubmed: 30755663
Biochemistry. 2020 Feb 4;59(4):509-519
pubmed: 31840994
Biochemistry. 2000 Mar 14;39(10):2667-76
pubmed: 10704217
Prog Biophys Mol Biol. 1992;58(1):1-18
pubmed: 1631313
Phys Chem Chem Phys. 2020 May 7;22(17):9195-9203
pubmed: 32149285
Phys Chem Chem Phys. 2021 Sep 7;23(33):18197-18205
pubmed: 34612283
Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2807-12
pubmed: 12604773
J Biol Chem. 2020 Jan 10;295(2):539-551
pubmed: 31801828
Biochemistry. 2012 Dec 4;51(48):9667-77
pubmed: 23151047
Acc Chem Res. 2015 Apr 21;48(4):998-1006
pubmed: 25799082
J Phys Chem B. 2020 May 21;124(20):4044-4055
pubmed: 32330037
Photochem Photobiol. 2000 May;71(5):655-61
pubmed: 10818798
Biochemistry. 1996 Dec 17;35(50):15997-6008
pubmed: 8973170
Biophys J. 2007 Oct 1;93(7):2410-7
pubmed: 17545245
Biochemistry. 2015 Sep 29;54(38):5839-48
pubmed: 26335286
Biochemistry. 1993 Jul 27;32(29):7512-8
pubmed: 8338849
J Biol Chem. 2019 Dec 6;294(49):18909-18922
pubmed: 31649035
Biochemistry. 1999 Nov 16;38(46):15185-92
pubmed: 10563801
J Phys Chem B. 2018 Sep 6;122(35):8330-8342
pubmed: 30109934
Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1784-9
pubmed: 19179399
Elife. 2018 Jun 05;7:
pubmed: 29869984
Biochemistry. 1993 Jul 13;32(27):6916-22
pubmed: 8334122
J Phys Chem B. 2017 Jan 12;121(1):47-57
pubmed: 27966353
Biophys J. 2009 May 20;96(10):4153-63
pubmed: 19450486
Photochem Photobiol. 2017 May;93(3):713-723
pubmed: 28500721
J Phys Chem B. 2007 Oct 11;111(40):11611-3
pubmed: 17877390
J Am Chem Soc. 2009 Oct 7;131(39):13946-8
pubmed: 19739629
Chem Soc Rev. 2009 Apr;38(4):913-24
pubmed: 19421571