Induction of the Erythroid Differentiation of K562 Cells Is Coupled with Changes in the Inter-Chromosomal Contacts of rDNA Clusters.
4C
K562
differentiation
gene expression
inter-chromosomal contacts
rDNA clusters
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
07 Jun 2023
07 Jun 2023
Historique:
received:
22
05
2023
revised:
02
06
2023
accepted:
05
06
2023
medline:
29
6
2023
pubmed:
28
6
2023
entrez:
28
6
2023
Statut:
epublish
Résumé
The expression of clusters of rDNA genes influences pluripotency; however, the underlying mechanisms are not yet known. These clusters shape inter-chromosomal contacts with numerous genes controlling differentiation in human and
Identifiants
pubmed: 37372991
pii: ijms24129842
doi: 10.3390/ijms24129842
pmc: PMC10298330
pii:
doi:
Substances chimiques
DNA, Ribosomal
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Russian Science Foundation
ID : No. 21-14-00035
Références
Genome Res. 2019 Mar;29(3):325-333
pubmed: 30765617
Front Genet. 2021 Aug 31;12:730633
pubmed: 34531902
Bioinformatics. 2014 Apr 1;30(7):923-30
pubmed: 24227677
Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5
pubmed: 27079975
Bioinformatics. 2010 Mar 1;26(5):589-95
pubmed: 20080505
Proc Natl Acad Sci U S A. 2020 May 12;117(19):10368-10377
pubmed: 32332163
Cell Stem Cell. 2014 Dec 4;15(6):720-34
pubmed: 25479748
Hum Mol Genet. 2006 Jun 15;15(12):2003-14
pubmed: 16682435
Jpn J Cancer Res. 1988 Dec;79(12):1318-26
pubmed: 3148602
BMC Bioinformatics. 2011 Aug 04;12:323
pubmed: 21816040
Int J Mol Sci. 2022 Jun 28;23(13):
pubmed: 35806206
Blood. 1975 Mar;45(3):321-34
pubmed: 163658
Immunity. 2017 Jun 20;46(6):943-956
pubmed: 28636961
FASEB J. 2002 Jun;16(8):869-71
pubmed: 11967234
Cell Stress. 2018 May 10;2(6):125-140
pubmed: 31225478
Nat Commun. 2018 Apr 10;9(1):1366
pubmed: 29636450
Science. 2018 Jul 27;361(6400):
pubmed: 29930091
Bioinformatics. 2012 Jul 15;28(14):1919-20
pubmed: 22576172
Chromosoma. 1981;81(4):619-28
pubmed: 6790245
Front Neurosci. 2021 Nov 18;15:760567
pubmed: 34867169
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Genome Biol. 2014;15(12):550
pubmed: 25516281
Cells. 2019 Nov 05;8(11):
pubmed: 31694324
Cell Stem Cell. 2014 Dec 4;15(6):675-6
pubmed: 25479743
Cell Physiol Biochem. 2018;46(1):365-374
pubmed: 29590650
Cell. 2018 Dec 13;175(7):1842-1855.e16
pubmed: 30449618
Nucleus. 2017 Mar 4;8(2):205-221
pubmed: 28068183
Commun Biol. 2019 Jan 28;2:39
pubmed: 30701204
J Mol Cell Biol. 2015 Aug;7(4):366-82
pubmed: 25280477
Cell. 2013 Nov 7;155(4):934-47
pubmed: 24119843
Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16495-500
pubmed: 15545610
Molecules. 2020 Nov 23;25(22):
pubmed: 33238435
Int J Mol Sci. 2021 Feb 03;22(4):
pubmed: 33546372
Nucleus. 2019 Dec;10(1):67-72
pubmed: 30870088
Medicina (Kaunas). 2020 May 29;56(6):
pubmed: 32485912
Dokl Biochem Biophys. 2020 Jan;490(1):50-53
pubmed: 32342314
Cells. 2020 Dec 03;9(12):
pubmed: 33287227
Mol Biol (Mosk). 2020 Mar-Apr;54(2):262-266
pubmed: 32392195
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Genome Biol. 2004;5(6):226
pubmed: 15186484
Trends Genet. 2019 Oct;35(10):743-753
pubmed: 31353047
PLoS Genet. 2013 Apr;9(4):e1003429
pubmed: 23593027
Ups J Med Sci. 2012 May;117(2):217-24
pubmed: 22376239
Stem Cell Reports. 2020 Dec 8;15(6):1206-1219
pubmed: 32976768
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
PLoS Genet. 2018 Mar 23;14(3):e1007258
pubmed: 29570716
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Nat Rev Mol Cell Biol. 2021 Feb;22(2):96-118
pubmed: 33353982