Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.


Journal

Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820

Informations de publication

Date de publication:
Jul 2023
Historique:
medline: 10 7 2023
pubmed: 7 7 2023
entrez: 7 7 2023
Statut: ppublish

Résumé

Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-resolved metagenomics approach to data obtained from Arctic, sub-Antarctic and Antarctic microbial mats. We recovered 37 metagenome-assembled genomes (MAGs) of Cyanobacteria representing 17 distinct species, most of which are only distantly related to genomes that have been sequenced so far. These include (i) lineages that are common in polar microbial mats such as the filamentous taxa

Identifiants

pubmed: 37417735
doi: 10.1099/mgen.0.001056
pmc: PMC10438808
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Références

Microb Ecol. 1998 Nov;36(3):231-238
pubmed: 9852503
ISME J. 2017 Dec;11(12):2864-2868
pubmed: 28742071
Appl Environ Microbiol. 2007 Aug;73(16):5261-7
pubmed: 17586664
Nat Commun. 2014 Jul 29;5:4500
pubmed: 25072318
Bioinformatics. 2019 Nov 15;:
pubmed: 31730192
Genome Biol Evol. 2021 Dec 1;13(12):
pubmed: 34850891
Nucleic Acids Res. 2021 Jan 8;49(D1):D274-D281
pubmed: 33167031
Microbiol Resour Announc. 2022 Jul 21;11(7):e0005922
pubmed: 35758689
FEMS Microbiol Ecol. 2018 Apr 1;94(4):
pubmed: 29506259
Appl Environ Microbiol. 2012 Jan;78(2):549-59
pubmed: 22081564
ISME J. 2021 Jan;15(1):211-227
pubmed: 32943748
Nat Commun. 2022 Oct 26;13(1):6367
pubmed: 36289209
Nat Microbiol. 2022 Oct;7(10):1702-1708
pubmed: 36123442
FEMS Microbiol Ecol. 2006 Aug;57(2):272-89
pubmed: 16867145
Sci Rep. 2016 Sep 23;6:33721
pubmed: 27659943
Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9310-4
pubmed: 27482085
Genome Res. 2020 Mar;30(3):315-333
pubmed: 32188701
FEMS Microbiol Ecol. 2011 Sep;77(3):503-17
pubmed: 21592144
Nat Commun. 2018 Nov 30;9(1):5114
pubmed: 30504855
Genome Announc. 2017 Feb 16;5(7):
pubmed: 28209814
J Phycol. 2015 Dec;51(6):1040-54
pubmed: 26987000
Microb Genom. 2018 Sep;4(9):
pubmed: 30136922
Int J Mol Sci. 2019 Jan 03;20(1):
pubmed: 30609821
Free Radic Biol Med. 2019 Aug 20;140:206-223
pubmed: 31078731
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Appl Environ Microbiol. 2009 Dec;75(23):7537-41
pubmed: 19801464
Nat Methods. 2022 Jul;19(7):823-826
pubmed: 35789207
Front Microbiol. 2019 Jul 12;10:1612
pubmed: 31354692
Front Microbiol. 2015 Oct 13;6:1070
pubmed: 26528250
Sci Rep. 2015 Oct 06;5:14835
pubmed: 26437902
Front Microbiol. 2018 Jun 07;9:1192
pubmed: 29930542
Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1053-8
pubmed: 23277585
FEMS Microbiol Ecol. 2020 Mar 1;96(3):
pubmed: 31778156
J Gen Appl Microbiol. 1997 Aug;43(4):237-241
pubmed: 12501325
Front Microbiol. 2012 Apr 26;3:140
pubmed: 22557996
Bioinformatics. 2016 Jul 15;32(14):2103-10
pubmed: 27153593
Biochim Biophys Acta Bioenerg. 2017 Apr;1858(4):325-335
pubmed: 28188780
J Gen Appl Microbiol. 2003 Jun;49(3):191-203
pubmed: 12949700
Microb Ecol. 2019 Jan;77(1):136-147
pubmed: 29796758
Environ Microbiome. 2022 Jun 11;17(1):30
pubmed: 35690846
FEMS Microbiol Ecol. 2016 Oct;92(10):
pubmed: 27411981
FEMS Microbes. 2022 Jun 24;3:xtac019
pubmed: 37332501
J Plant Res. 2022 Nov;135(6):771-784
pubmed: 36107269
Mol Biosyst. 2016 Oct 18;12(11):3254-3258
pubmed: 27754509
J Phycol. 2016 Jun;52(3):356-68
pubmed: 27273529
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Proc Natl Acad Sci U S A. 2021 Nov 16;118(46):
pubmed: 34750267
DNA Res. 2003 Aug 31;10(4):137-45
pubmed: 14621292
FEMS Microbiol Lett. 2001 Jul 10;201(1):79-82
pubmed: 11445171
J Mol Evol. 1999 Jun;48(6):723-39
pubmed: 10229577
Syst Appl Microbiol. 2018 Jul;41(4):363-373
pubmed: 29452715
Environ Microbiol. 2021 Feb;23(2):713-727
pubmed: 32627309
Curr Protoc Bioinformatics. 2013 Jun;Chapter 3:3.1.1-3.1.8
pubmed: 23749753
Nat Microbiol. 2021 Jan;6(1):3-6
pubmed: 33349678
Bioinformatics. 2016 Oct 1;32(19):3047-8
pubmed: 27312411
Nat Rev Microbiol. 2011 Oct 03;9(11):791-802
pubmed: 21963801
Bioinformatics. 2019 Oct 15;35(20):4162-4164
pubmed: 30865266
PLoS Comput Biol. 2011 Oct;7(10):e1002195
pubmed: 22039361
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Nucleic Acids Res. 2022 Jan 7;50(D1):D785-D794
pubmed: 34520557
Curr Biol. 2021 Jul 12;31(13):2857-2867.e4
pubmed: 33989529
Genome Biol Evol. 2014 May;6(5):1031-45
pubmed: 24709563
Genes (Basel). 2021 Mar 16;12(3):
pubmed: 33809699
Mol Ecol Resour. 2015 Nov;15(6):1403-14
pubmed: 25732605
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
BMC Evol Biol. 2010 Jan 25;10:24
pubmed: 20100331
Mol Ecol. 2018 Dec;27(24):5279-5293
pubmed: 30565777
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419
pubmed: 33125078
FEMS Microbiol Ecol. 2014 Nov;90(2):335-50
pubmed: 25109247
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
ISME J. 2020 Aug;14(8):2142-2152
pubmed: 32424249
ISME J. 2010 Feb;4(2):191-202
pubmed: 19890368
BMC Genomics. 2016 Aug 02;17:533
pubmed: 27485510
Mol Ecol. 2014 Oct;23(19):4831-45
pubmed: 24975397
FEMS Microbiol Ecol. 2017 May 1;93(5):
pubmed: 28334326
PLoS One. 2013 Oct 23;8(10):e76376
pubmed: 24194836
ISME J. 2017 Nov;11(11):2399-2406
pubmed: 28731467
Ecol Lett. 2014 Aug;17(8):979-87
pubmed: 24847735
mSphere. 2021 Aug 25;6(4):e0006121
pubmed: 34287010
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
Curr Biol. 2021 Jul 12;31(13):R843-R845
pubmed: 34256915
PLoS One. 2013 Jun 18;8(6):e66323
pubmed: 23823729
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
FEMS Microbiol Ecol. 2018 May 1;94(5):
pubmed: 29547924
Appl Environ Microbiol. 2003 Sep;69(9):5157-69
pubmed: 12957897
FEMS Microbiol Ecol. 2015 Dec;91(12):
pubmed: 26564957
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Bioinformatics. 2020 Apr 1;36(7):2251-2252
pubmed: 31742321

Auteurs

Igor S Pessi (IS)

Department of Microbiology, University of Helsinki, Helsinki, Finland.
Helsinki Institute of Sustainability Science (HELSUS), Helsinki, Finland.

Rafael V Popin (RV)

Department of Microbiology, University of Helsinki, Helsinki, Finland.

Benoit Durieu (B)

InBioS - Centre for Protein Engineering, University of Liège, Liège, Belgium.

Yannick Lara (Y)

Early Life Traces & Evolution-Astrobiology, UR-Astrobiology, University of Liège, Liège, Belgium.

Bjorn Tytgat (B)

Laboratory of Protistology & Aquatic Ecology, Ghent University, Ghent, Belgium.

Valentina Savaglia (V)

InBioS - Centre for Protein Engineering, University of Liège, Liège, Belgium.
Laboratory of Protistology & Aquatic Ecology, Ghent University, Ghent, Belgium.

Beatriz Roncero-Ramos (B)

InBioS - Centre for Protein Engineering, University of Liège, Liège, Belgium.
Department of Plant Biology and Ecology, University of Sevilla, Sevilla, Spain.

Jenni Hultman (J)

Department of Microbiology, University of Helsinki, Helsinki, Finland.
Helsinki Institute of Sustainability Science (HELSUS), Helsinki, Finland.
Natural Resources Institute Finland (LUKE), Helsinki, Finland.

Elie Verleyen (E)

Laboratory of Protistology & Aquatic Ecology, Ghent University, Ghent, Belgium.

Wim Vyverman (W)

Laboratory of Protistology & Aquatic Ecology, Ghent University, Ghent, Belgium.

Annick Wilmotte (A)

InBioS - Centre for Protein Engineering, University of Liège, Liège, Belgium.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Coal Metagenome Phylogeny Bacteria Genome, Bacterial
Lakes Salinity Archaea Bacteria Microbiota
Animals Feces Herbivory Biomarkers Parks, Recreational

Classifications MeSH