5'/3' RACE method for sequencing the 5' and 3' untranslated regions of Zika virus.
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
10 Jul 2023
10 Jul 2023
Historique:
received:
12
09
2022
accepted:
19
05
2023
medline:
12
7
2023
pubmed:
10
7
2023
entrez:
10
7
2023
Statut:
epublish
Résumé
The spread of Zika virus (ZIKV) from the African continent to the Americas promoted its molecular evolution, as reflected by mutations in its RNA genome. Most of the ZIKV genome sequences in the GenBank database have incomplete 5' and 3' UTR sequences, reflecting the deficiency of whole-genome sequencing technologies to resolve the sequences of the genome ends. We modified a protocol for rapid amplification of cDNA ends (RACE) to determine the complete sequences of the 5' and 3' UTRs of a previously reported ZIKV isolate (GenBank no. MH544701.1). This strategy is useful for determining 5' and 3' UTR sequences of ZIKV isolates and will be useful for comparative genomics applications.
Identifiants
pubmed: 37428234
doi: 10.1007/s00705-023-05820-8
pii: 10.1007/s00705-023-05820-8
doi:
Substances chimiques
3' Untranslated Regions
0
RNA, Viral
0
5' Untranslated Regions
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
204Subventions
Organisme : Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)
ID : 210474455818
Informations de copyright
© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.
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