Harmonized cross-species cell atlases of trigeminal and dorsal root ganglia.

dorsal root ganglion pain scRNA-seq somatosensation trigeminal ganglion

Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
05 Jul 2023
Historique:
pubmed: 18 7 2023
medline: 18 7 2023
entrez: 18 7 2023
Statut: epublish

Résumé

Peripheral sensory neurons in the dorsal root ganglion (DRG) and trigeminal ganglion (TG) are specialized to detect and transduce diverse environmental stimuli including touch, temperature, and pain to the central nervous system. Recent advances in single-cell RNA-sequencing (scRNA-seq) have provided new insights into the diversity of sensory ganglia cell types in rodents, non-human primates, and humans, but it remains difficult to compare transcriptomically defined cell types across studies and species. Here, we built cross-species harmonized atlases of DRG and TG cell types that describe 18 neuronal and 11 non-neuronal cell types across 6 species and 19 studies. We then demonstrate the utility of this harmonized reference atlas by using it to annotate newly profiled DRG nuclei/cells from both human and the highly regenerative axolotl. We observe that the transcriptomic profiles of sensory neuron subtypes are broadly similar across vertebrates, but the expression of functionally important neuropeptides and channels can vary notably. The new resources and data presented here can guide future studies in comparative transcriptomics, simplify cell type nomenclature differences across studies, and help prioritize targets for future pain therapy development.

Identifiants

pubmed: 37461736
doi: 10.1101/2023.07.04.547740
pmc: PMC10350076
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NINDS NIH HHS
ID : U19 NS130607
Pays : United States
Organisme : NINDS NIH HHS
ID : U19 NS130617
Pays : United States
Organisme : NEI NIH HHS
ID : U01 EY034709
Pays : United States
Organisme : NINDS NIH HHS
ID : K08 NS101064
Pays : United States
Organisme : NINDS NIH HHS
ID : U19 NS130608
Pays : United States
Organisme : NIDA NIH HHS
ID : DP1 DA054343
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS119476
Pays : United States

Déclaration de conflit d'intérêts

W.R. receives research funding from Teva Pharmaceuticals and is on an Abbvie scientific advisory board. C.J.W. is a Scientific Advisory Board member of Lundbeck, QurAlis, Axonis, Tafalgie Therapeutics. R.W.G. serves on the Scientific Advisory Board for Doloromics. T.J.P. is a cofounder of Doloromics and receives research funding from Abbvie and Merck.

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Auteurs

Shamsuddin A Bhuiyan (SA)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.

Mengyi Xu (M)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Alan Edwards Center for Research on Pain and Department of Physiology, McGill University, Montreal, QC, H3G 1Y6, Canada.

Lite Yang (L)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Evangelia Semizoglou (E)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.

Parth Bhatia (P)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.

Katerina I Pantaleo (KI)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.

Ivan Tochitsky (I)

F.M. Kirby Neurobiology Center and Department of Neurobiology, Boston Children's Hospital and Harvard Medical School, 3 Blackfan Cir. Boston, MA 02115.

Aakanksha Jain (A)

F.M. Kirby Neurobiology Center and Department of Neurobiology, Boston Children's Hospital and Harvard Medical School, 3 Blackfan Cir. Boston, MA 02115.

Burcu Erdogan (B)

Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, 02138.

Steven Blair (S)

Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, 02138.

Victor Cat (V)

Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, 02138.

Juliet M Mwirigi (JM)

Department of Neuroscience and Center for Advanced Pain Studies, University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080.

Ishwarya Sankaranarayanan (I)

Department of Neuroscience and Center for Advanced Pain Studies, University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080.

Diana Tavares-Ferreira (D)

Department of Neuroscience and Center for Advanced Pain Studies, University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080.

Ursula Green (U)

Department of Pathology, Center for Integrated Diagnostics, Massachussetts General Hospital and Havard Medical School, Boston, MA 02114.

Lisa A McIlvried (LA)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Bryan A Copits (BA)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Zachariah Bertels (Z)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

John S Del Rosario (JS)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Allie J Widman (AJ)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Richard A Slivicki (RA)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Jiwon Yi (J)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

Clifford J Woolf (CJ)

F.M. Kirby Neurobiology Center and Department of Neurobiology, Boston Children's Hospital and Harvard Medical School, 3 Blackfan Cir. Boston, MA 02115.

Jochen K Lennerz (JK)

Department of Pathology, Center for Integrated Diagnostics, Massachussetts General Hospital and Havard Medical School, Boston, MA 02114.

Jessica L Whited (JL)

Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, 02138.

Theodore J Price (TJ)

Department of Neuroscience and Center for Advanced Pain Studies, University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080.

Robert W Gereau (RW)

Program in Neurosciences, Division of Biology and Biomedical Sciences, Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

William Renthal (W)

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.

Classifications MeSH