Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.


Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
15 08 2023
Historique:
medline: 9 8 2023
pubmed: 7 8 2023
entrez: 7 8 2023
Statut: ppublish

Résumé

Microbes evolve rapidly by modifying their genomes through mutations or through the horizontal acquisition of mobile genetic elements (MGEs) linked with fitness traits such as antimicrobial resistance (AMR), virulence, and metabolic functions. We conducted a multicentric study in India and collected different clinical samples for decoding the genome sequences of bacterial pathogens associated with sepsis, urinary tract infections, and respiratory infections to understand the functional potency associated with AMR and its dynamics. Genomic analysis identified several acquired AMR genes (ARGs) that have a pathogen-specific signature. We observed that

Identifiants

pubmed: 37549252
doi: 10.1073/pnas.2305465120
pmc: PMC10434301
doi:

Substances chimiques

Anti-Bacterial Agents 0
beta-Lactamases EC 3.5.2.6

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e2305465120

Références

Microb Genom. 2019 Oct;5(10):
pubmed: 31599224
EcoSal Plus. 2018 Nov;8(1):
pubmed: 30447062
Lancet. 2022 Feb 12;399(10325):629-655
pubmed: 35065702
Microb Genom. 2021 Sep;7(9):
pubmed: 34559043
PLoS One. 2020 Feb 26;15(2):e0220428
pubmed: 32101543
Indian J Med Microbiol. 2020 Jul-Dec;38(3 & 4):313-318
pubmed: 33154241
Microbiol Immunol. 2015 May;59(5):277-84
pubmed: 25726848
Cell. 2019 Jan 24;176(3):649-662.e20
pubmed: 30661755
Genome Biol. 2020 Jul 22;21(1):180
pubmed: 32698896
Clin Microbiol Rev. 2019 Aug 28;32(4):
pubmed: 31462403
Indian J Med Res. 2019 Feb;149(2):222-231
pubmed: 31219087
Indian J Med Res. 2019 Feb;149(2):240-246
pubmed: 31219089
J Infect Public Health. 2020 Jul;13(7):1022-1028
pubmed: 31874816
Sci Rep. 2017 Oct 31;7(1):14468
pubmed: 29089611
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
J Infect Dev Ctries. 2013 Apr 17;7(4):358-60
pubmed: 23592647
Indian J Med Res. 2019 Feb;149(2):87-96
pubmed: 31219073
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595
pubmed: 28594827
PLoS One. 2022 Mar 23;17(3):e0265884
pubmed: 35320327
Nat Commun. 2022 Jul 5;13(1):3864
pubmed: 35790755
Bioinformatics. 2007 Jan 1;23(1):127-8
pubmed: 17050570
BMC Genomics. 2008 Feb 08;9:75
pubmed: 18261238
Indian J Med Microbiol. 2018 Jul-Sep;36(3):344-351
pubmed: 30429385
Clin Microbiol Rev. 2018 Aug 1;31(4):
pubmed: 30068738
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Exp Eye Res. 2021 Apr;205:108504
pubmed: 33610601
Bioinformatics. 2021 Aug 25;37(16):2473-2475
pubmed: 33459763
J Antimicrob Chemother. 2022 Feb 23;77(3):556-567
pubmed: 34894259
J Glob Antimicrob Resist. 2022 Sep;30:431-441
pubmed: 35569758
Wellcome Open Res. 2018 Sep 24;3:124
pubmed: 30345391

Auteurs

Tanshi Mehrotra (T)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Dipasri Konar (D)

Division of Diagnostic Laboratory, Jan Swasthya Sahyog, Ganiyari, Bilaspur 495112, India.

Agila Kumari Pragasam (AK)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Shakti Kumar (S)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Pradipta Jana (P)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Prabhakar Babele (P)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Deepjyoti Paul (D)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Ayushi Purohit (A)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Subhash Tanwar (S)

Multidisciplinary Clinical and Translational Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Susmita Bakshi (S)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Santanu Das (S)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Jyoti Verma (J)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Daizee Talukdar (D)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Lekshmi Narendrakumar (L)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Akanksha Kothidar (A)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Sonali Porey Karmakar (SP)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Susmita Chaudhuri (S)

Multidisciplinary Clinical and Translational Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Sujoy Pal (S)

Department of Gastroenterology and Human Nutrition, All India Institute of Medical Sciences, New Delhi 110029, India.

Kajal Jain (K)

Department of Gastroenterology and Human Nutrition, All India Institute of Medical Sciences, New Delhi 110029, India.

Chittur V Srikanth (CV)

Laboratory of Gut Infection and Inflammation Biology, Regional Centre for Biotechnology, Faridabad 121001, India.

M Jeeva Sankar (MJ)

Department of Pediatrics, All India Institute of Medical Sciences, New Delhi 110029, India.

Krishnamohan Atmakuri (K)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

Ramesh Agarwal (R)

Department of Pediatrics, All India Institute of Medical Sciences, New Delhi 110029, India.

Rajni Gaind (R)

Department of Microbiology, Vardhman Mahavir Medical College and Safdarjung Hospital, New Delhi 110029, India.

Mamatha Ballal (M)

Department of Microbiology, Kasturba Medical College, Manipal Academy of Higher Education, Manipal 576104, India.

Nagamani Kammili (N)

Department of Microbiology, Pathogen Biology Division, Gandhi Medical College and Hospital, Secunderabad 500003, India.

Rupak K Bhadra (RK)

Infectious Diseases and Immunology Division, Council of Scientific and Industrial Research-Indian Institute of Chemical Biology, Kolkata 700 032, India.

Thandavarayan Ramamurthy (T)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.
Division of Bacteriology, Indian Council of Medical Research-National Institute of Cholera and Enteric Diseases, Kolkata 700010, India.

G Balakrish Nair (GB)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.
Pathogen Biology Division, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram 695014, India.

Bhabatosh Das (B)

Infection and Immunology Division, Functional Genomics Laboratory, Centre for Microbial Research, Translational Health Science and Technology Institute, Faridabad 121001, India.

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Classifications MeSH