Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership.

Biological Magnetic Resonance Bank Electron Microscopy Data Bank Protein Data Bank Worldwide Protein Data Bank macromolecular crystallography nuclear magnetic resonance three-dimensional cryo-electron microscopy

Journal

Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043

Informations de publication

Date de publication:
01 Sep 2023
Historique:
received: 01 07 2023
accepted: 21 07 2023
medline: 6 9 2023
pubmed: 10 8 2023
entrez: 10 8 2023
Statut: ppublish

Résumé

The Protein Data Bank (PDB) is the single global archive of atomic-level, three-dimensional structures of biological macromolecules experimentally determined by macromolecular crystallography, nuclear magnetic resonance spectroscopy or three-dimensional cryo-electron microscopy. The PDB is growing continuously, with a recent rapid increase in new structure depositions from Asia. In 2022, the Worldwide Protein Data Bank (wwPDB; https://www.wwpdb.org/) partners welcomed Protein Data Bank China (PDBc; https://www.pdbc.org.cn) to the organization as an Associate Member. PDBc is based in the National Facility for Protein Science in Shanghai which is associated with the Shanghai Advanced Research Institute of Chinese Academy of Sciences, the Shanghai Institute for Advanced Immunochemical Studies and the iHuman Institute of ShanghaiTech University. This letter describes the history of the wwPDB, recently established mechanisms for adding new wwPDB data centers and the processes developed to bring PDBc into the partnership.

Identifiants

pubmed: 37561405
pii: S2059798323006381
doi: 10.1107/S2059798323006381
pmc: PMC10478634
doi:

Substances chimiques

Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

792-795

Subventions

Organisme : NIH HHS
ID : R01GM133198
Pays : United States
Organisme : Wellcome Trust
ID : 221327/Z/20/Z
Pays : United Kingdom
Organisme : NIH HHS
ID : R01GM133198
Pays : United States

Informations de copyright

open access.

Références

Nucleic Acids Res. 2019 Jan 8;47(D1):D520-D528
pubmed: 30357364
Nat Struct Biol. 2003 Dec;10(12):980
pubmed: 14634627
Glycobiology. 2021 Sep 20;31(9):1204-1218
pubmed: 33978738
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
pubmed: 10592235
Structure. 2017 Dec 5;25(12):1916-1927
pubmed: 29174494
Structure. 2021 Apr 1;29(4):393-400.e1
pubmed: 33657417

Auteurs

Wenqing Xu (W)

Protein Data Bank China, ShanghaiTech University and National Facility for Protein Science in Shanghai, Shanghai, People's Republic of China.

Sameer Velankar (S)

Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.

Ardan Patwardhan (A)

Electron Microscopy Data Bank, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.

Jeffrey C Hoch (JC)

Biological Magnetic Resonance Data Bank, UConn Health, Farmington, CT 06030-3305, USA.

Stephen K Burley (SK)

Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine and Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

Genji Kurisu (G)

Protein Data Bank Japan, Institute for Protein Research, Osaka University, Osaka 565-0871, Japan.

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Classifications MeSH