Extreme environments offer an unprecedented opportunity to understand microbial eukaryotic ecology, evolution, and genome biology.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
16 08 2023
16 08 2023
Historique:
received:
23
03
2023
accepted:
31
07
2023
medline:
18
8
2023
pubmed:
17
8
2023
entrez:
16
8
2023
Statut:
epublish
Résumé
Research in extreme environments has substantially expanded our understanding of the ecology and evolution of life on Earth, but a major group of organisms has been largely overlooked: microbial eukaryotes (i.e., protists). In this Perspective, we summarize data from over 80 studies of protists in extreme environments and identify focal lineages that are of significant interest for further study, including clades within Echinamoebida, Heterolobosea, Radiolaria, Haptophyta, Oomycota, and Cryptophyta. We argue that extreme environments are prime sampling targets to fill gaps in the eukaryotic tree of life and to increase our understanding of the ecology, metabolism, genome architecture, and evolution of eukaryotic life.
Identifiants
pubmed: 37587119
doi: 10.1038/s41467-023-40657-4
pii: 10.1038/s41467-023-40657-4
pmc: PMC10432404
doi:
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
4959Informations de copyright
© 2023. Springer Nature Limited.
Références
Proc Natl Acad Sci U S A. 2022 Feb 15;119(7):
pubmed: 35145022
Nat Microbiol. 2023 Feb;8(2):197-203
pubmed: 36646908
Extremophiles. 2013 Jul;17(4):623-36
pubmed: 23712906
BMC Biol. 2007 Jul 10;5:28
pubmed: 17623057
Genome Biol Evol. 2014 Sep 29;6(10):2731-40
pubmed: 25267447
Nat Rev Microbiol. 2022 Apr;20(4):219-235
pubmed: 34754082
J Eukaryot Microbiol. 2015 May-Jun;62(3):374-90
pubmed: 25382699
J Eukaryot Microbiol. 2009 Mar-Apr;56(2):201-6
pubmed: 21462554
Environ Microbiol. 2010 Apr;12(4):1041-52
pubmed: 20105220
Microorganisms. 2014 Jan 03;2(1):11-32
pubmed: 27694774
Biochim Biophys Acta Bioenerg. 2021 Jan 1;1862(1):148334
pubmed: 33159845
Mol Ecol. 2022 Oct 27;:
pubmed: 36302092
Elife. 2019 May 31;8:
pubmed: 31149898
Sci Adv. 2020 Jan 24;6(4):eaax8787
pubmed: 32042898
Extremophiles. 2007 Jul;11(4):563-76
pubmed: 17426921
Trends Genet. 2020 Dec;36(12):915-925
pubmed: 33012528
Front Microbiol. 2019 Apr 15;10:780
pubmed: 31037068
FEMS Microbiol Rev. 2003 Apr;27(1):3-16
pubmed: 12697339
Microbiol Mol Biol Rev. 2006 Mar;70(1):222-52
pubmed: 16524924
PeerJ. 2016 Sep 13;4:e2376
pubmed: 27672493
Biochem Biophys Rep. 2022 Feb 07;30:101220
pubmed: 35198739
Nat Ecol Evol. 2017 Apr 20;1(5):145
pubmed: 28812681
J Eukaryot Microbiol. 2002 May-Jun;49(3):227-38
pubmed: 12120988
PLoS Biol. 2018 Feb 2;16(2):e2005163
pubmed: 29394244
ISME J. 2018 Aug;12(8):1918-1928
pubmed: 29662145
Viruses. 2019 Apr 30;11(5):
pubmed: 31052218
Microbiologyopen. 2012 Jun;1(2):83-94
pubmed: 22950016
BMC Biol. 2020 May 24;18(1):56
pubmed: 32448240
Proc Natl Acad Sci U S A. 2002 May 28;99(11):7658-62
pubmed: 12032339
Trends Ecol Evol. 2022 Jun;37(6):517-528
pubmed: 35246323
Environ Microbiol. 2019 Oct;21(10):3796-3815
pubmed: 31271493
Front Microbiol. 2013 May 06;4:67
pubmed: 23653623
Genome Biol Evol. 2022 May 31;14(6):
pubmed: 35218347
Virol J. 2019 Nov 4;16(1):126
pubmed: 31684962
Mol Biol Evol. 2019 Aug 1;36(8):1831-1842
pubmed: 31062861
Nat Rev Microbiol. 2018 Nov;16(11):661-670
pubmed: 30127345
ISME J. 2020 Feb;14(2):544-559
pubmed: 31685936
ISME J. 2020 Jul;14(7):1873-1885
pubmed: 32341474
Extremophiles. 2019 Jul;23(4):367-376
pubmed: 31119431
Int J Environ Res Public Health. 2021 Feb 26;18(5):
pubmed: 33652560
Curr Biol. 2021 Oct 11;31(19):R1267-R1280
pubmed: 34637739
Microb Ecol. 2007 Feb;53(2):294-305
pubmed: 17268880
J Eukaryot Microbiol. 2022 Sep;69(5):e12912
pubmed: 35325496
Life (Basel). 2013 Jul 04;3(3):363-74
pubmed: 25369810
Trends Ecol Evol. 2004 Jan;19(1):32-8
pubmed: 16701223
Extremophiles. 2006 Dec;10(6):493-504
pubmed: 16874468
Polarforschung. 1988;58(2-3):121-4
pubmed: 11538353
FEBS Lett. 1999 Jun 4;452(1-2):22-5
pubmed: 10376671
Int Rev Cytol. 2007;256:1-34
pubmed: 17241903
Curr Biol. 2020 Sep 7;30(17):3330-3341.e7
pubmed: 32619486
Environ Microbiol. 2009 Feb;11(2):360-81
pubmed: 18826436
ISME J. 2013 Jun;7(6):1211-26
pubmed: 23389107
Science. 2013 Mar 8;339(6124):1207-10
pubmed: 23471408
Front Microbiol. 2012 Sep 11;3:325
pubmed: 22973267
ISME J. 2011 Sep;5(9):1559-64
pubmed: 21390078
Appl Environ Microbiol. 1998 May;64(5):1822-4
pubmed: 9572957
Sci Adv. 2021 May 26;7(22):
pubmed: 34039603
Mol Biol Evol. 2018 Nov 1;35(11):2702-2711
pubmed: 30184126
Sci Rep. 2021 Sep 21;11(1):18782
pubmed: 34548559
Ecology. 2020 Sep;101(9):e03075
pubmed: 32304224
Biomed Res Int. 2015;2015:437534
pubmed: 25648302
Saline Syst. 2008 Apr 15;4:2
pubmed: 18412960
Curr Biol. 2020 Jun 8;30(11):2037-2050.e6
pubmed: 32330419
Nat Commun. 2018 Jul 23;9(1):2876
pubmed: 30038374
Protist. 2005 Nov;156(3):287-302
pubmed: 16325542
Extremophiles. 2003 Aug;7(4):267-74
pubmed: 12910386
BMC Evol Biol. 2020 Sep 7;20(1):112
pubmed: 32892741
Semin Cell Dev Biol. 2023 Jan 30;134:4-13
pubmed: 35339358
Environ Microbiol. 2022 May;24(5):2179-2200
pubmed: 35412019
Genome Biol Evol. 2014 Dec 30;7(1):367-80
pubmed: 25552531
Microbiology (Reading). 1994 Jun;140 ( Pt 6):1253-9
pubmed: 8081490
Nature. 2009 Sep 17;461(7262):393-8
pubmed: 19741609
J Biomol Tech. 2017 Apr;28(1):31-39
pubmed: 28337070
Curr Biol. 2013 Oct 7;23(19):R865-6
pubmed: 24112977
Protist. 2009 May;160(2):265-83
pubmed: 19121603
Biomolecules. 2021 Jun 24;11(7):
pubmed: 34202768
Extremophiles. 2014 Sep;18(5):865-75
pubmed: 25113821
Eur J Protistol. 2009 Aug;45(3):231-6
pubmed: 19339165
Eur J Protistol. 2011 Jan;47(1):16-23
pubmed: 20932726
Appl Environ Microbiol. 2008 Sep;74(18):5822-31
pubmed: 18641160
Microb Ecol. 2023 Oct;86(3):1534-1551
pubmed: 36757423
Protist. 2007 Jul;158(3):397-413
pubmed: 17576098
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8304-E8313
pubmed: 28893987
Nat Ecol Evol. 2022 Oct;6(10):1458-1470
pubmed: 35927316
Genome Biol Evol. 2021 Feb 3;13(2):
pubmed: 33185659
Nature. 2002 May 9;417(6885):137
pubmed: 12000949