Aggregation of an Amyloidogenic Peptide on Gold Surfaces.

molecular dynamics simulation peptide aggregation protein adsorption

Journal

Biomolecules
ISSN: 2218-273X
Titre abrégé: Biomolecules
Pays: Switzerland
ID NLM: 101596414

Informations de publication

Date de publication:
18 08 2023
Historique:
received: 06 07 2023
revised: 03 08 2023
accepted: 14 08 2023
medline: 28 8 2023
pubmed: 26 8 2023
entrez: 26 8 2023
Statut: epublish

Résumé

Solid surfaces have been shown to affect the aggregation and assembly of many biomolecular systems. One important example is the formation of protein fibrils, which can occur on a range of biological and synthetic surfaces. The rate of fibrillation depends on both the protein structure and the surface chemistry, with the different molecular and oligomer structures adopted by proteins on surfaces likely to be crucial. In this paper, the aggregation of the model amyloidogenic peptide, Aβ(16-22), corresponding to a hydrophobic segment of the amyloid beta protein on a gold surface is studied using molecular dynamics simulation. Previous simulations of this peptide on gold surfaces have shown that it adopts conformations on surfaces that are quite different from those in bulk solution. These simulations show that this then leads to significant differences in the oligomer structures formed in solution and on gold surfaces. In particular, oligomers formed on the surface are low in beta-strands so are unlike the structures formed in bulk solution. When oligomers formed in solution adsorb onto gold surfaces they can then restructure themselves. This can then help explain the inhibition of Aβ(16-22) fibrillation by gold surfaces and nanoparticles seen experimentally.

Identifiants

pubmed: 37627326
pii: biom13081261
doi: 10.3390/biom13081261
pmc: PMC10452923
pii:
doi:

Substances chimiques

Amyloid beta-Peptides 0
Gold 7440-57-5

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Références

Chem Soc Rev. 2020 Aug 7;49(15):5473-5509
pubmed: 32632432
Nanoscale. 2013 Apr 7;5(7):2570-88
pubmed: 23463168
Science. 2009 Jul 17;325(5938):328-32
pubmed: 19541956
J Phys Chem B. 1998 Apr 30;102(18):3586-616
pubmed: 24889800
Chem Rev. 2011 Sep 14;111(9):5610-37
pubmed: 21688848
Angew Chem Int Ed Engl. 2016 Sep 5;55(37):11242-6
pubmed: 27513605
Biopolymers. 2004;76(1):27-33
pubmed: 14997472
FASEB J. 2010 Jan;24(1):309-17
pubmed: 19741169
Ann Indian Acad Neurol. 2015 Apr-Jun;18(2):138-45
pubmed: 26019408
Biomater Sci. 2018 Feb 27;6(3):462-472
pubmed: 29435550
Chem Rec. 2020 Dec;20(12):1474-1504
pubmed: 32970383
J Comput Chem. 2005 Dec;26(16):1701-18
pubmed: 16211538
J Struct Biol. 2015 Dec;192(3):376-391
pubmed: 26433030
J Colloid Interface Sci. 2022 Sep 15;622:804-818
pubmed: 35569410
Chem Commun (Camb). 2008 Dec 28;(48):6522-4
pubmed: 19057766
Nat Rev Drug Discov. 2002 Apr;1(4):267-75
pubmed: 12120278
ACS Nano. 2015 Mar 24;9(3):2600-13
pubmed: 25695203
J Am Chem Soc. 2014 Aug 20;136(33):11776-82
pubmed: 25068615
Nanoscale. 2018 Dec 7;10(45):20894-20913
pubmed: 30225490
J Chem Theory Comput. 2019 Jan 8;15(1):613-624
pubmed: 30540462
J Comput Chem. 2011 Jul 30;32(10):2319-27
pubmed: 21500218
Front Neurol. 2013 Mar 01;4:17
pubmed: 23459674
Nat Protoc. 2016 Feb;11(2):252-72
pubmed: 26741409
J Comput Chem. 2008 Jul 30;29(10):1656-66
pubmed: 18351601
J Mol Graph. 1996 Feb;14(1):33-8, 27-8
pubmed: 8744570
PLoS Comput Biol. 2009 Aug;5(8):e1000458
pubmed: 19680431
Acc Chem Res. 2017 Jul 18;50(7):1617-1624
pubmed: 28665581
ACS Nano. 2012 Oct 23;6(10):9276-82
pubmed: 23002915
Chem Rev. 2019 Jun 26;119(12):6956-6993
pubmed: 30973229
ACS Omega. 2019 Feb 05;4(2):2649-2660
pubmed: 31459500
Phys Chem Chem Phys. 2005 Dec 7;7(23):3910-6
pubmed: 19810318
J Comput Chem. 2009 Oct;30(13):2157-64
pubmed: 19229944
J Neurochem. 2007 Jun;101(5):1172-84
pubmed: 17286590
Nat Rev Microbiol. 2005 Apr;3(4):333-41
pubmed: 15806095
PLoS One. 2011 May 03;6(5):e19129
pubmed: 21559277
Chembiochem. 2016 Apr 15;17(8):657-76
pubmed: 26910367
Langmuir. 2010 Mar 2;26(5):3308-16
pubmed: 19928820
J Phys Chem Lett. 2014 Jun 5;5(11):1899-908
pubmed: 26273871
Chem Rev. 2012 Oct 10;112(10):5147-92
pubmed: 22813427
Langmuir. 2018 Mar 20;34(11):3517-3524
pubmed: 29489382
PLoS Biol. 2012;10(5):e1001335
pubmed: 22666178
J Am Chem Soc. 2012 Aug 29;134(34):14172-8
pubmed: 22867029
Adv Mater. 2016 Aug;28(31):6546-61
pubmed: 27165397
Curr Opin Struct Biol. 2021 Apr;67:145-152
pubmed: 33279865
Nat Rev Mol Cell Biol. 2014 Jun;15(6):384-96
pubmed: 24854788
J Phys Chem Lett. 2015 Mar 19;6(6):1076-81
pubmed: 26262873
J Chem Theory Comput. 2020 Dec 8;16(12):7825-7839
pubmed: 33233894
Science. 2006 Nov 3;314(5800):777-81
pubmed: 17082447
Nanoscale. 2017 Feb 9;9(6):2279-2290
pubmed: 28124697
Q Rev Biophys. 2016;49:e4
pubmed: 26821792
J Mol Biol. 2018 Oct 12;430(20):3642-3656
pubmed: 30098341
Biochemistry. 2000 Nov 14;39(45):13748-59
pubmed: 11076514
Langmuir. 2011 Dec 20;27(24):14876-87
pubmed: 22077332
Nat Commun. 2018 Feb 16;9(1):699
pubmed: 29453354
Phys Chem Chem Phys. 2017 Jul 5;19(26):17373-17382
pubmed: 28650060
Biointerphases. 2020 Sep 04;15(5):051001
pubmed: 32887527
Biophys J. 2011 Nov 2;101(9):2267-76
pubmed: 22067167
Biophys J. 2011 May 4;100(9):L47-9
pubmed: 21539772
J Chem Theory Comput. 2010 Feb 9;6(2):459-66
pubmed: 26617301
Chemphyschem. 2017 Mar 3;18(5):526-536
pubmed: 28032949
Proc Natl Acad Sci U S A. 2007 May 22;104(21):8691-6
pubmed: 17485668
J Chem Theory Comput. 2013 Mar 12;9(3):1616-30
pubmed: 26587623
Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):16938-43
pubmed: 21949245
J Chem Phys. 2007 Jan 7;126(1):014101
pubmed: 17212484
Int J Mol Sci. 2020 Dec 22;22(1):
pubmed: 33375086
J Biol Chem. 1996 Apr 12;271(15):8545-8
pubmed: 8621479
RSC Adv. 2015 Jan 1;5(127):105498
pubmed: 26989481
Chem Mater. 2017 Feb 28;29(4):1550-1560
pubmed: 28260837
Nanoscale. 2016 Apr 28;8(16):8737-48
pubmed: 27064268

Auteurs

David L Cheung (DL)

School of Biological and Chemical Sciences, University of Galway, H91 TK33 Galway, Ireland.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Humans Hyaluronic Acid Osteoarthritis, Hip Female Middle Aged
Fucosyltransferases Drug Repositioning Molecular Docking Simulation Molecular Dynamics Simulation Humans
Tumor Microenvironment Nanoparticles Immunotherapy Cellular Senescence Animals

Classifications MeSH