The spectral underpinnings of pathogen spread on animal networks.

disease simulation models graph theory machine learning wildlife

Journal

Proceedings. Biological sciences
ISSN: 1471-2954
Titre abrégé: Proc Biol Sci
Pays: England
ID NLM: 101245157

Informations de publication

Date de publication:
27 09 2023
Historique:
medline: 21 9 2023
pubmed: 20 9 2023
entrez: 20 9 2023
Statut: ppublish

Résumé

Predicting what factors promote or protect populations from infectious disease is a fundamental epidemiological challenge. Social networks, where nodes represent hosts and edges represent direct or indirect contacts between them, are important in quantifying these aspects of infectious disease dynamics. However, how network structure and epidemic parameters interact in empirical networks to promote or protect animal populations from infectious disease remains a challenge. Here we draw on advances in spectral graph theory and machine learning to build predictive models of pathogen spread on a large collection of empirical networks from across the animal kingdom. We show that the spectral features of an animal network are powerful predictors of pathogen spread for a variety of hosts and pathogens and can be a valuable proxy for the vulnerability of animal networks to pathogen spread. We validate our findings using interpretable machine learning techniques and provide a flexible web application for animal health practitioners to assess the vulnerability of a particular network to pathogen spread.

Identifiants

pubmed: 37727089
doi: 10.1098/rspb.2023.0951
pmc: PMC10509581
doi:

Banques de données

figshare
['10.6084/m9.figshare.c.6806464']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

20230951

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Auteurs

Nicholas M Fountain-Jones (NM)

School of Natural Sciences, University of Tasmania, Hobart 7001, Australia.

Mathew Silk (M)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.
Centre for Ecology and Conservation, University of Exeter, Penryn Campus, Penryn, UK.

Raima Carol Appaw (RC)

School of Natural Sciences, University of Tasmania, Hobart 7001, Australia.

Rodrigo Hamede (R)

School of Natural Sciences, University of Tasmania, Hobart 7001, Australia.

Julie Rushmore (J)

Odum School of Ecology, University of Georgia, Athens, GA, USA.

Kimberly VanderWaal (K)

Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN, USA.

Meggan E Craft (ME)

Department of Ecology, Evolution, and Behavior, University of Minnesota, St Paul, MN, USA.

Scott Carver (S)

School of Natural Sciences, University of Tasmania, Hobart 7001, Australia.

Michael Charleston (M)

School of Natural Sciences, University of Tasmania, Hobart 7001, Australia.

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Classifications MeSH