CELLULAR RNA INTERACTS WITH MAVS TO PROMOTE ANTIVIRAL SIGNALING.


Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
25 Sep 2023
Historique:
medline: 9 10 2023
pubmed: 9 10 2023
entrez: 9 10 2023
Statut: epublish

Résumé

Immune signaling needs to be well-regulated to promote clearance of pathogens, while preventing aberrant inflammation. Interferons (IFNs) and antiviral genes are activated by the detection of viral RNA by RIG-I-like receptors (RLRs). Signal transduction downstream of RLRs proceeds through a multi-protein complex organized around the central adaptor protein MAVS. Recent work has shown that protein complex function can be modulated by RNA molecules providing allosteric regulation or acting as molecular guides or scaffolds. Thus, we hypothesized that RNA plays a role in organizing MAVS signaling platforms. Here, we show that MAVS, through its central intrinsically disordered domain, directly interacts with the 3' untranslated regions of cellular mRNAs. Importantly, elimination of RNA by RNase treatment disrupts the MAVS signalosome, including newly identified regulators of RLR signaling, and inhibits phosphorylation of the transcription factor IRF3. This supports the hypothesis that RNA molecules scaffold proteins in the MAVS signalosome to induce IFNs. Together, this work uncovers a function for cellular RNA in promoting signaling through MAVS and highlights a generalizable principle of RNA regulatory control of cytoplasmic immune signaling complexes.

Identifiants

pubmed: 37808873
doi: 10.1101/2023.09.25.559083
pmc: PMC10557580
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIAID NIH HHS
ID : T32 AI106677
Pays : United States

Déclaration de conflit d'intérêts

COMPETING INTERESTS M.G. is a founder and shareholder in Kineta, Inc., and of HDT Bio.

Références

Adv Sci (Weinh). 2022 Nov;9(33):e2203831
pubmed: 36216581
Nat Methods. 2013 Aug;10(8):730-6
pubmed: 23921808
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Nat Protoc. 2007;2(8):1896-906
pubmed: 17703201
Nat Rev Immunol. 2014 Dec;14(12):821-6
pubmed: 25359439
Mol Cell. 2009 Oct 23;36(2):315-25
pubmed: 19854139
Nat Methods. 2014 Feb;11(2):122-3
pubmed: 24481216
Nat Methods. 2017 May;14(5):513-520
pubmed: 28394336
PLoS Comput Biol. 2020 May 26;16(5):e1007864
pubmed: 32453748
Cell. 2014 Feb 13;156(4):800-11
pubmed: 24529381
Front Mol Biosci. 2021 May 13;8:669939
pubmed: 34055886
Nucleic Acids Res. 2021 Jul 2;49(W1):W297-W303
pubmed: 34048569
Mol Cell. 2016 Aug 18;63(4):696-710
pubmed: 27453046
Cell. 2013 Jul 3;154(1):26-46
pubmed: 23827673
Mol Cell. 2022 Jul 21;82(14):2666-2680.e11
pubmed: 35709751
Nature. 2015 Jun 18;522(7556):363-7
pubmed: 25896326
Science. 2014 Jan 3;343(6166):84-87
pubmed: 24336571
Mol Cell. 2005 Sep 16;19(6):727-40
pubmed: 16153868
J Proteome Res. 2019 Feb 1;18(2):623-632
pubmed: 30450911
Genome Res. 2015 Oct;25(10):1456-65
pubmed: 26430155
Open Biol. 2019 Jun 28;9(6):190096
pubmed: 31213136
Cold Spring Harb Perspect Biol. 2019 Oct 1;11(10):
pubmed: 30181377
Mol Ther Nucleic Acids. 2021 Jul 21;25:515-523
pubmed: 34589274
Proc Natl Acad Sci U S A. 2007 Jan 9;104(2):582-7
pubmed: 17190814
Proc Natl Acad Sci U S A. 2020 Apr 21;117(16):9042-9053
pubmed: 32241891
Science. 2015 Mar 13;347(6227):aaa2630
pubmed: 25636800
Cell. 2005 Sep 9;122(5):669-82
pubmed: 16125763
J Virol. 2015 Jul;89(14):6974-7
pubmed: 25948741
PLoS One. 2010 Nov 15;5(11):e13984
pubmed: 21085593
Bioinformatics. 2011 Dec 15;27(24):3423-4
pubmed: 21949271
Annu Rev Biochem. 1991;60:191-227
pubmed: 1883196
PLoS Biol. 2017 Dec 18;15(12):e2004086
pubmed: 29253856
Cell. 2010 Feb 5;140(3):397-408
pubmed: 20144762
Cell. 2010 May 14;141(4):668-81
pubmed: 20451243
Nature. 2008 Jul 24;454(7203):523-7
pubmed: 18548002
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Gigascience. 2021 Feb 16;10(2):
pubmed: 33590861
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Nat Methods. 2016 Jun;13(6):489-92
pubmed: 27111506
Bioinformatics. 2016 Oct 1;32(19):3047-8
pubmed: 27312411
Nat Genet. 2003 Jul;34(3):267-73
pubmed: 12808457
Trends Biochem Sci. 2015 Nov;40(11):662-672
pubmed: 26481498
Gigascience. 2018 Jan 1;7(1):1-6
pubmed: 29220494
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
PLoS Pathog. 2017 Nov 10;13(11):e1006720
pubmed: 29125880
Sci Signal. 2021 Jul 13;14(691):
pubmed: 34257104
Mol Cell. 2019 Jul 11;75(1):184-199.e10
pubmed: 31076284
Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14590-5
pubmed: 21844353
Immunity. 2000 Oct;13(4):539-48
pubmed: 11070172
Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613
pubmed: 30476243
Cell Commun Signal. 2016 Apr 06;14:9
pubmed: 27048167
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Cell. 2019 Feb 21;176(5):1054-1067.e12
pubmed: 30773316
Nat Methods. 2021 May;18(5):507-519
pubmed: 33963355
Nat Methods. 2020 Jan;17(1):41-44
pubmed: 31768060
Nucleic Acids Res. 2023 Jul 5;51(W1):W198-W206
pubmed: 36987846
Nat Rev Immunol. 2014 Jan;14(1):36-49
pubmed: 24362405
Elife. 2013 Aug 14;2:e00785
pubmed: 23951545
Proc Natl Acad Sci U S A. 2023 Apr 18;120(16):e2210623120
pubmed: 37043539
Cell. 2018 Jan 25;172(3):393-407
pubmed: 29373828
F1000Res. 2021 Jan 18;10:33
pubmed: 34035898
Nature. 2006 May 4;441(7089):101-5
pubmed: 16625202
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10437-42
pubmed: 9724721
Nat Rev Mol Cell Biol. 2018 May;19(5):327-341
pubmed: 29339797
Nat Methods. 2016 Sep;13(9):731-40
pubmed: 27348712
Mol Cell. 2016 Oct 20;64(2):416-430
pubmed: 27768875
Cell. 1995 Dec 29;83(7):1091-100
pubmed: 8548797
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Protein Sci. 2021 Jan;30(1):187-200
pubmed: 33070389
Nat Commun. 2015 Jul 17;6:7811
pubmed: 26183716
Nucleic Acids Res. 2021 Jan 8;49(D1):D425-D436
pubmed: 33196814
RNA. 2020 Sep;26(9):1216-1233
pubmed: 32467309
Nat Rev Mol Cell Biol. 2015 Jan;16(1):18-29
pubmed: 25531225
Genes Dev. 2022 Sep 1;36(17-18):1002-1015
pubmed: 36302554
Nature. 2005 Oct 20;437(7062):1167-72
pubmed: 16177806
Cell. 2011 Aug 5;146(3):448-61
pubmed: 21782231
Nat Rev Immunol. 2020 Sep;20(9):537-551
pubmed: 32203325
mBio. 2020 Aug 25;11(4):
pubmed: 32843550
Mol Cell. 2022 Feb 17;82(4):868-878.e10
pubmed: 35081365

Auteurs

Nandan S Gokhale (NS)

Department of Immunology, University of Washington, Seattle, WA.

Kim Somfleth (K)

Department of Immunology, University of Washington, Seattle, WA.

Matthew G Thompson (MG)

Department of Integrative Immunobiology, Duke University, Durham, NC.

Russell K Sam (RK)

Department of Immunology, University of Washington, Seattle, WA.

Daphnée M Marciniak (DM)

Department of Pharmacology, University of Washington, Seattle, WA.

Lan H Chu (LH)

Department of Immunology, University of Washington, Seattle, WA.

Moonhee Park (M)

Department of Integrative Immunobiology, Duke University, Durham, NC.

Steve Dvorkin (S)

Department of Immunology, University of Washington, Seattle, WA.

Andrew Oberst (A)

Department of Immunology, University of Washington, Seattle, WA.

Stacy M Horner (SM)

Department of Integrative Immunobiology, Duke University, Durham, NC.
Department of Medicine, Duke University, Durham NC.

Shao-En Ong (SE)

Department of Pharmacology, University of Washington, Seattle, WA.

Michael Gale (M)

Department of Immunology, University of Washington, Seattle, WA.

Ram Savan (R)

Department of Immunology, University of Washington, Seattle, WA.

Classifications MeSH