Mechanistically transparent models for predicting aqueous solubility of rigid, slightly flexible, and very flexible drugs (MW<2000) Accuracy near that of random forest regression.
Abraham solvation equation (ABSOLV)
Consensus model
General solubility equation (GSE)
Kier molecular flexibility index (Φ)
decision-tree Exclusive Or (XOR) model
drug-like molecules
flexible-acceptor GSE(Φ,B)
intrinsic solubility
machine learning (ML)
Journal
ADMET & DMPK
ISSN: 1848-7718
Titre abrégé: ADMET DMPK
Pays: Croatia
ID NLM: 101660124
Informations de publication
Date de publication:
2023
2023
Historique:
received:
08
05
2023
revised:
15
08
2023
medline:
13
10
2023
pubmed:
13
10
2023
entrez:
13
10
2023
Statut:
epublish
Résumé
Yalkowsky's General Solubility Equation (GSE), with its three fixed constants, is popular and easy to apply, but is not very accurate for polar, zwitterionic, or flexible molecules. This review examines the findings of a series of studies, where we have sought to come up with a better prediction model, by comparing the performances of the GSE to Abraham's Solvation Equation (ABSOLV), and Random Forest regression (RFR) machine-learning (ML) method. Large, well-curated aqueous intrinsic solubility databases are available. However, drugs may be sparsely distributed in chemical space, concentrated in clusters. Even a large database might overlook some regions. Test compounds from under-represented portions of space may be poorly predicted, as might be the case with the 'loose' set of 32 drugs in the Second Solubility Challenge (2020). There appears to be still a need for better coverage of drug space. Increasingly, current trends in predictions of solubility use calculated input descriptors, which may be an advantage for exploring properties of molecules yet to be synthesized. The risk may be that overall prediction approaches might be based on accumulated uncertainty. The increasing use of ML/AI methods can lead to accurate predictions, but such predictions may not readily suggest the strategies to pursue in selecting yet-to-be-synthesized compounds. Based on our latest findings, we recommend predictions based on both 'grouped' ABSOLV(GRP) and 'Flexible Acceptor' GSE(
Identifiants
pubmed: 37829322
doi: 10.5599/admet.1879
pmc: PMC10567068
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
317-330Informations de copyright
Copyright © 2023 by the authors.
Déclaration de conflit d'intérêts
Conflict of interest: None
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