Diversity of hydrodynamic radii of intrinsically disordered proteins.

Conformational change Fluorescence correlation spectroscopy Gene expression regulation Hydrodynamic radius Intrinsically disordered protein

Journal

European biophysics journal : EBJ
ISSN: 1432-1017
Titre abrégé: Eur Biophys J
Pays: Germany
ID NLM: 8409413

Informations de publication

Date de publication:
Oct 2023
Historique:
received: 15 05 2023
accepted: 06 09 2023
revised: 08 08 2023
medline: 1 11 2023
pubmed: 13 10 2023
entrez: 13 10 2023
Statut: ppublish

Résumé

Intrinsically disordered proteins (IDPs) form an important class of biomolecules regulating biological processes in higher organisms. The lack of a fixed spatial structure facilitates them to perform their regulatory functions and allows the efficiency of biochemical reactions to be controlled by temperature and the cellular environment. From the biophysical point of view, IDPs are biopolymers with a broad configuration state space and their actual conformation depends on non-covalent interactions of its amino acid side chain groups at given temperature and chemical conditions. Thus, the hydrodynamic radius (R

Identifiants

pubmed: 37831084
doi: 10.1007/s00249-023-01683-8
pii: 10.1007/s00249-023-01683-8
pmc: PMC10618399
doi:

Substances chimiques

Intrinsically Disordered Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

607-618

Subventions

Organisme : Narodowe Centrum Nauki
ID : UMO-2016/22/E/NZ1/00656

Informations de copyright

© 2023. The Author(s).

Références

J Biol Chem. 2004 Sep 24;279(39):40707-14
pubmed: 15231848
Biochemistry. 1999 Nov 9;38(45):15009-16
pubmed: 10555983
Front Genet. 2018 May 04;9:158
pubmed: 29780404
Biochemistry. 2008 Oct 14;47(41):10841-51
pubmed: 18803399
J Phys Chem B. 2019 Apr 25;123(16):3462-3474
pubmed: 30913885
Biophys J. 2018 Feb 27;114(4):788-799
pubmed: 29490241
Adv Exp Med Biol. 2013;768:147-63
pubmed: 23224969
J Mol Biol. 2003 Nov 7;333(5):977-91
pubmed: 14583194
Biochemistry. 2007 Nov 13;46(45):13120-30
pubmed: 17929838
Eur Phys J E Soft Matter. 2012 Dec;35(12):9806
pubmed: 23239268
J Biol Chem. 1992 Jan 25;267(3):1411-4
pubmed: 1309782
Curr Opin Struct Biol. 2011 Jun;21(3):432-40
pubmed: 21514144
Mol Biol Cell. 2002 Apr;13(4):1338-51
pubmed: 11950943
Biophys J. 2000 Apr;78(4):2060-9
pubmed: 10733984
ACS Cent Sci. 2018 May 23;4(5):534-542
pubmed: 29805999
EMBO J. 2005 Dec 7;24(23):4082-93
pubmed: 16281054
Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2450-5
pubmed: 12604785
Proc Natl Acad Sci U S A. 2007 Aug 7;104(32):13022-7
pubmed: 17666528
Cell Commun Signal. 2020 Aug 24;18(1):132
pubmed: 32831102
J Biol Chem. 2007 Jul 20;282(29):21518-28
pubmed: 17513864
Methods Mol Biol. 2018;1688:375-389
pubmed: 29151218
Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11302-E11310
pubmed: 30420502
J Mol Biol. 2002 Jun 7;319(3):615-35
pubmed: 12054859
Nat Rev Mol Cell Biol. 2005 Mar;6(3):197-208
pubmed: 15738986
Proteins. 2003 Nov 15;53(3):758-67
pubmed: 14579366
Nat Methods. 2022 Jun;19(6):679-682
pubmed: 35637307
Genes Dev. 2001 Nov 1;15(21):2852-64
pubmed: 11691836
Protein J. 2009 Oct;28(7-8):305-25
pubmed: 19768526
Protein Sci. 2007 Nov;16(11):2510-8
pubmed: 17905836
J Steroid Biochem Mol Biol. 2019 Feb;186:42-55
pubmed: 30243841
Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14609-14
pubmed: 20639465
PLoS One. 2010 Jul 21;5(7):e11684
pubmed: 20657787
Mol Cell. 2005 Jan 7;17(1):11-21
pubmed: 15629713
Chem Rev. 2022 Mar 23;122(6):6719-6748
pubmed: 35179885
J Mol Biol. 2004 Mar 26;337(3):635-45
pubmed: 15019783
J Mol Biol. 2017 Jan 20;429(2):261-279
pubmed: 27890783
PLoS Comput Biol. 2008 Aug 08;4(8):e1000145
pubmed: 18688269
Proteins. 2003 Dec 1;53(4):855-62
pubmed: 14635127
J Phys Chem B. 2013 Jan 10;117(1):118-24
pubmed: 23205890
J Am Chem Soc. 2020 Sep 16;142(37):15697-15710
pubmed: 32840111
Protein Sci. 2001 Apr;10(4):677-88
pubmed: 11274458
J Biol Chem. 1987 May 25;262(15):7429-37
pubmed: 3584120
J Cell Sci. 2007 Apr 15;120(Pt 8):1317-23
pubmed: 17401112
Genes Dev. 2014 Apr 15;28(8):888-901
pubmed: 24736845
Biophys J. 2010 May 19;98(10):2383-90
pubmed: 20483348
Curr Opin Cell Biol. 2021 Apr;69:70-79
pubmed: 33503539
Proteins. 2002 Jan 1;46(1):1-7
pubmed: 11746698
Biophys J. 2008 Feb 15;94(4):1437-48
pubmed: 17933881
J Phys Chem Lett. 2020 Dec 3;11(23):10131-10136
pubmed: 33191750
Cell. 2016 Jul 28;166(3):651-663
pubmed: 27374333
Mol Cell. 2014 Jun 5;54(5):751-65
pubmed: 24768538
Biochem Biophys Res Commun. 2006 Apr 28;343(1):311-8
pubmed: 16542639
Structure. 2011 Apr 13;19(4):566-76
pubmed: 21481779
Biochemistry. 2000 Dec 5;39(48):14950-9
pubmed: 11101311
Structure. 2019 Feb 5;27(2):381-391.e2
pubmed: 30554840
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Chemphyschem. 2011 Feb 25;12(3):532-41
pubmed: 21308943
Biochim Biophys Acta Proteins Proteom. 2017 Nov;1865(11 Pt A):1358-1371
pubmed: 28866388
Biophys J. 2023 Jan 17;122(2):310-321
pubmed: 36518077
PLoS Comput Biol. 2016 Jan 04;12(1):e1004686
pubmed: 26727467
Proteins. 2014 Apr;82(4):668-78
pubmed: 24150971
Biomacromolecules. 2008 Aug;9(8):2118-25
pubmed: 18636772
Curr Opin Struct Biol. 2017 Jun;44:18-30
pubmed: 27838525
Protein Sci. 1998 Jul;7(7):1639-42
pubmed: 9684899
Cell. 2019 Jan 24;176(3):419-434
pubmed: 30682370
Biophys J. 2008 Aug;95(4):1928-44
pubmed: 18456828
Nature. 2015 Mar 5;519(7541):106-9
pubmed: 25533957
Mol Cell. 1999 Jun;3(6):707-16
pubmed: 10394359
J Am Soc Mass Spectrom. 2018 Jan;29(1):158-173
pubmed: 29080206
Proteomics. 2019 Aug;19(16):e1900036
pubmed: 31219243
Biophys J. 2017 Aug 8;113(3):550-557
pubmed: 28793210
Biochemistry. 2019 Jul 9;58(27):3031-3041
pubmed: 31243991
J Proteome Res. 2007 Sep;6(9):3648-54
pubmed: 17676886
Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16155-60
pubmed: 22984159
Virology. 2002 May 10;296(2):251-62
pubmed: 12069524
J Clin Invest. 2015 May;125(5):2151-60
pubmed: 25893599
J Mol Biol. 1985 Oct 5;185(3):595-624
pubmed: 4057257
Biochemistry. 1998 Jan 6;37(1):9-15
pubmed: 9453748
J Biol Chem. 2002 Apr 5;277(14):11970-8
pubmed: 11812782
J Proteome Res. 2002 Mar-Apr;1(2):149-59
pubmed: 12643535
Biochemistry. 1999 Dec 14;38(50):16424-31
pubmed: 10600103
J Biol Chem. 2008 Nov 7;283(45):31142-52
pubmed: 18779323
EMBO J. 2022 Mar 1;41(5):e109952
pubmed: 35107832
Proteins. 2008 May 1;71(2):587-98
pubmed: 17972286
J Neurosci. 1984 Jan;4(1):99-110
pubmed: 6319628
J Biol Chem. 2002 Sep 6;277(36):33447-55
pubmed: 12065587
Protein Sci. 2005 Jun;14(6):1410-8
pubmed: 15929994
Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2214064120
pubmed: 36972455
Proteins. 2017 Feb;85(2):296-311
pubmed: 27936491
Plant Physiol. 2007 Feb;143(2):617-28
pubmed: 17189335
Nat Struct Mol Biol. 2013 Jun;20(6):735-9
pubmed: 23644599
Nature. 2018 Mar 1;555(7694):61-66
pubmed: 29466338
Proteins. 2014 Dec;82(12):3373-84
pubmed: 25244701
Curr Opin Struct Biol. 2019 Dec;59:134-142
pubmed: 31479821
Biophys Chem. 2011 Oct;158(2-3):141-9
pubmed: 21741754
Cell. 2018 May 3;173(4):946-957.e16
pubmed: 29576456
Biophys J. 2008 May 15;94(10):4103-13
pubmed: 18234806
Nature. 1994 Oct 27;371(6500):762-7
pubmed: 7935836
J Biol Chem. 2003 May 16;278(20):18638-48
pubmed: 12621042
J Mol Biol. 2008 Dec 5;384(1):240-54
pubmed: 18809412
J Mol Biol. 2008 May 23;379(1):105-21
pubmed: 18440022
Curr Opin Cell Biol. 2021 Apr;69:30-40
pubmed: 33450720
J Chem Theory Comput. 2015 Nov 10;11(11):5513-24
pubmed: 26574339
Biochemistry. 2000 Feb 22;39(7):1739-47
pubmed: 10677223
Biochemistry. 2009 Feb 17;48(6):1348-60
pubmed: 19170609
Biochemistry. 2000 Mar 14;39(10):2708-13
pubmed: 10704222
Crit Rev Biochem Mol Biol. 2013 Mar-Apr;48(2):192-209
pubmed: 23496118
Biochemistry. 2008 Dec 16;47(50):13428-37
pubmed: 19086274
Nat Struct Mol Biol. 2011 Oct 07;18(11):1211-7
pubmed: 21984185
Structure. 2009 Feb 13;17(2):276-86
pubmed: 19217398
J Biol Chem. 2008 Jun 13;283(24):16895-905
pubmed: 18343814
J Proteome Res. 2003 Jan-Feb;2(1):37-42
pubmed: 12643541
Nature. 1992 Jul 16;358(6383):209-15
pubmed: 1630489
J Mol Biol. 2018 Aug 3;430(16):2403-2421
pubmed: 29763584
Nat Commun. 2021 Dec 14;12(1):7257
pubmed: 34907237

Auteurs

Michał K Białobrzewski (MK)

Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland.

Barbara P Klepka (BP)

Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland.

Agnieszka Michaś (A)

Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland.

Maja K Cieplak-Rotowska (MK)

Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland.
Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, PL-02093, Warsaw, Poland.
The International Institute of Molecular Mechanisms and Machines, Polish Academy of Sciences, Flisa 6, PL-02247, Warsaw, Poland.

Zuzanna Staszałek (Z)

Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland.

Anna Niedźwiecka (A)

Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland. annan@ifpan.edu.pl.

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