Binding mechanism and biological effects of flavone DYRK1A inhibitors for the design of new antidiabetics.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
23 10 2023
Historique:
received: 06 06 2023
accepted: 12 10 2023
medline: 27 10 2023
pubmed: 24 10 2023
entrez: 23 10 2023
Statut: epublish

Résumé

The selective inhibition of kinases from the diabetic kinome is known to promote the regeneration of beta cells and provide an opportunity for the curative treatment of diabetes. The effect can be achieved by carefully tailoring the selectivity of inhibitor toward a particular kinase, especially DYRK1A, previously associated with Down syndrome and Alzheimer's disease. Recently DYRK1A inhibition has been shown to promote both insulin secretion and beta cells proliferation. Here, we show that commonly available flavones are effective inhibitors of DYRK1A. The observed biochemical activity of flavone compounds is confirmed by crystal structures solved at 2.06 Å and 2.32 Å resolution, deciphering the way inhibitors bind in the ATP-binding pocket of the kinase, which is driven by the arrangement of hydroxyl moieties. We also demonstrate antidiabetic properties of these biomolecules and prove that they could be further improved by therapy combined with TGF-β inhibitors. Our data will allow future structure-based optimization of the presented scaffolds toward potent, bioavailable and selective anti-diabetic drugs.

Identifiants

pubmed: 37872245
doi: 10.1038/s41598-023-44810-3
pii: 10.1038/s41598-023-44810-3
pmc: PMC10593742
doi:

Substances chimiques

flavone S2V45N7G3B
Hypoglycemic Agents 0
Flavones 0
Protein Kinase Inhibitors 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

18114

Informations de copyright

© 2023. Springer Nature Limited.

Références

Biochem Pharmacol. 2013 Nov 15;86(10):1468-75
pubmed: 24021351
J Diabetes. 2012 Mar;4(1):41-6
pubmed: 21722326
Food Funct. 2017 Mar 22;8(3):1313-1322
pubmed: 28256654
Chem Commun (Camb). 2009 Jul 21;(27):4118-20
pubmed: 19568652
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
Free Radic Res. 1999 Dec;31(6):569-73
pubmed: 10630681
Front Plant Sci. 2012 Sep 28;3:222
pubmed: 23060891
Cell Transplant. 2018 Oct;27(10):1548-1560
pubmed: 30251567
Molecules. 2022 Nov 22;27(23):
pubmed: 36500226
In Vitro Cell Dev Biol Anim. 2020 Sep;56(8):622-634
pubmed: 32901429
Int J Mol Sci. 2022 Aug 19;23(16):
pubmed: 36012629
Chem Biol Drug Des. 2006 Jan;67(1):83-4
pubmed: 16492153
Drug Discov Today Technol. 2004 Dec;1(4):337-41
pubmed: 24981612
J Comput Aided Mol Des. 2013 Mar;27(3):221-34
pubmed: 23579614
Blood. 2007 Jun 15;109(12):5112-21
pubmed: 17332240
Sci Rep. 2021 Nov 25;11(1):22959
pubmed: 34824300
Sci Transl Med. 2020 Feb 12;12(530):
pubmed: 32051230
Molecules. 2011 Jun 21;16(6):5159-67
pubmed: 21694679
Gastroenterol Hepatol Bed Bench. 2020 Summer;13(3):247-253
pubmed: 32821355
Plants (Basel). 2016 Jun 21;5(2):
pubmed: 27338492
ChemMedChem. 2020 Aug 19;15(16):1562-1570
pubmed: 32613743
J Adv Pharm Technol Res. 2012 Oct;3(4):200-1
pubmed: 23378939
Int J Mol Sci. 2021 Aug 23;22(16):
pubmed: 34445786
Arch Pharm Res. 2004 Apr;27(4):454-9
pubmed: 15180313
Molecules. 2019 Jun 20;24(12):
pubmed: 31226738
Genes Dev. 1997 Apr 15;11(8):957-72
pubmed: 9136925
J Biomed Biotechnol. 2012;2012:267890
pubmed: 22536016
Curr Neuropharmacol. 2019;17(7):590-613
pubmed: 30081787
Eur J Pharmacol. 2019 Jul 5;854:187-193
pubmed: 30970232
Endocrinology. 2004 Feb;145(2):667-78
pubmed: 14592952
Biochem Soc Trans. 2005 Apr;33(Pt 2):339-42
pubmed: 15787601
Mol Cell Biochem. 2017 Feb;426(1-2):27-45
pubmed: 27868170
Nutrients. 2018 May 30;10(6):
pubmed: 29849003
Biomed Pharmacother. 2019 Sep;117:109102
pubmed: 31228802
Arch Biochem Biophys. 2014 Oct 1;559:38-45
pubmed: 24875145
Bioinformation. 2019 Mar 15;15(3):179-188
pubmed: 31354193
J Med Chem. 2021 Mar 25;64(6):2901-2922
pubmed: 33682417
Life Sci. 2011 Dec 19;89(25-26):939-45
pubmed: 22008478
J Mol Biol. 2013 Jan 23;425(2):411-23
pubmed: 23142567
J Am Chem Soc. 2013 Feb 6;135(5):1669-72
pubmed: 23330637
Biomolecules. 2019 Sep 01;9(9):
pubmed: 31480505
Int J Biol Macromol. 2017 Nov;104(Pt A):527-532
pubmed: 28625836
PLoS One. 2021 Dec 10;16(12):e0260853
pubmed: 34890431
Indian J Pharmacol. 2013 Nov-Dec;45(6):575-80
pubmed: 24347764
J Biochem Mol Toxicol. 2006;20(2):96-102
pubmed: 16615078
J Med Chem. 2018 Sep 13;61(17):7560-7572
pubmed: 30095246
BMC Complement Altern Med. 2012 Oct 08;12:176
pubmed: 23039079
Biomolecules. 2020 Nov 12;10(11):
pubmed: 33198400
J Biol Chem. 2000 Jan 28;275(4):2431-8
pubmed: 10644696
Curr Pharm Des. 2012;18(20):2964-73
pubmed: 22571664
J Nat Prod. 2011 Jan 28;74(1):38-44
pubmed: 21141876
Evid Based Complement Alternat Med. 2013;2013:303902
pubmed: 23533474
Front Aging Neurosci. 2022 Aug 23;14:902092
pubmed: 36081896
Afr J Tradit Complement Altern Med. 2006 Aug 28;4(1):64-74
pubmed: 20162074
Mol Cell Biochem. 2006 Dec;293(1-2):211-9
pubmed: 16786186
Int J Mol Sci. 2020 Mar 09;21(5):
pubmed: 32182914
J Med Chem. 2018 Sep 13;61(17):7687-7699
pubmed: 30059217
J Nutr Biochem. 2018 Jul;57:212-227
pubmed: 29758481
Nat Rev Endocrinol. 2011 Nov 08;8(4):228-36
pubmed: 22064493
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67
pubmed: 22505256
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877
pubmed: 31588918
J Clin Pharmacol. 2011 Jun;51(6):796-804
pubmed: 20705952
Cells. 2021 Aug 31;10(9):
pubmed: 34571911
Diabetologia. 2018 Aug;61(8):1693-1699
pubmed: 29770834
Neurobiol Aging. 2002 Sep-Oct;23(5):861-80
pubmed: 12392791
PLoS One. 2017 Feb 24;12(2):e0172985
pubmed: 28235034
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
J Med Chem. 2023 Mar 23;66(6):4009-4024
pubmed: 36883902
Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1204-14
pubmed: 23793146
J Nutr Sci. 2016 Dec 29;5:e47
pubmed: 28620474
Biochimie. 2018 Aug;151:107-114
pubmed: 29857184
J Med Chem. 2013 Dec 12;56(23):9569-85
pubmed: 24188002
J Nutr Biochem. 2009 Apr;20(4):269-75
pubmed: 18602817
Sci Rep. 2018 Feb 12;8(1):2859
pubmed: 29434250
Gen Pharmacol. 1999 Mar;32(3):279-86
pubmed: 10211581
Free Radic Biol Med. 2004 Apr 1;36(7):838-49
pubmed: 15019969
J Nat Prod. 2020 May 22;83(5):1541-1552
pubmed: 32364726
Sci Adv. 2019 Feb 27;5(2):eaau6328
pubmed: 30820451
Int J Mol Sci. 2021 Nov 18;22(22):
pubmed: 34830339
Nat Med. 2015 Apr;21(4):383-8
pubmed: 25751815
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W209-13
pubmed: 22570410
Neuropharmacology. 2015 Jun;93:134-45
pubmed: 25666032
Nutrients. 2017 Dec 01;9(12):
pubmed: 29194424
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Int J Endocrinol. 2014;2014:846742
pubmed: 25147566
Behav Brain Res. 2014 May 1;264:173-80
pubmed: 24512768
Endocrinology. 2010 Jul;151(7):3026-37
pubmed: 20484465
Cell Metab. 2019 Mar 5;29(3):638-652.e5
pubmed: 30581122
Br J Pharmacol. 2010 Oct;161(4):799-814
pubmed: 20860660
Chromosoma. 2018 Jun;127(2):175-186
pubmed: 29322240
J Med Chem. 2023 Mar 23;66(6):4106-4130
pubmed: 36876904
Int J Mol Sci. 2020 Nov 18;21(22):
pubmed: 33218103
Biochemistry. 1982 Nov 9;21(23):5794-9
pubmed: 6295440
J Nutr Biochem. 2020 Sep;83:108427
pubmed: 32559585
Commun Biol. 2021 Feb 5;4(1):162
pubmed: 33547411
Pharmaceuticals (Basel). 2023 Mar 15;16(3):
pubmed: 36986543
Evid Based Complement Alternat Med. 2015;2015:754931
pubmed: 26649063

Auteurs

Katarzyna Pustelny (K)

Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, 30-387, Krakow, Poland.

Przemyslaw Grygier (P)

Doctoral School of Exact and Natural Sciences, Jagiellonian University, Krakow, Poland.

Agata Barzowska (A)

Doctoral School of Exact and Natural Sciences, Jagiellonian University, Krakow, Poland.

Barbara Pucelik (B)

Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, 30-387, Krakow, Poland.

Alex Matsuda (A)

Doctoral School of Exact and Natural Sciences, Jagiellonian University, Krakow, Poland.

Krzysztof Mrowiec (K)

Doctoral School of Exact and Natural Sciences, Jagiellonian University, Krakow, Poland.

Emilia Slugocka (E)

Doctoral School of Medical and Health Sciences, Jagiellonian University Medical College, Krakow, Poland.

Grzegorz M Popowicz (GM)

Institute of Structural Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany.

Grzegorz Dubin (G)

Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, 30-387, Krakow, Poland.

Anna Czarna (A)

Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, 30-387, Krakow, Poland. anna1.czarna@uj.edu.pl.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH