A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC.


Journal

Journal of clinical microbiology
ISSN: 1098-660X
Titre abrégé: J Clin Microbiol
Pays: United States
ID NLM: 7505564

Informations de publication

Date de publication:
21 Nov 2023
Historique:
medline: 27 11 2023
pubmed: 26 10 2023
entrez: 26 10 2023
Statut: ppublish

Résumé

The rapid pace of name changes of medically important fungi is creating challenges for clinical laboratories and clinicians involved in patient care. We describe two sources of name change which have different drivers, at the species versus the genus level. Some suggestions are made here to reduce the number of name changes. We urge taxonomists to provide diagnostic markers of taxonomic novelties. Given the instability of phylogenetic trees due to variable taxon sampling, we advocate to maintain genera at the largest possible size. Reporting of identified species in complexes or series should where possible comprise both the name of the overarching species and that of the molecular sibling, often cryptic species. Because the use of different names for the same species will be unavoidable for many years to come, an open access online database of the names of all medically important fungi, with proper nomenclatural designation and synonymy, is essential. We further recommend that while taxonomic discovery continues, the adaptation of new name changes by clinical laboratories and clinicians be reviewed routinely by a standing committee for validation and stability over time, with reference to an open access database, wherein reasons for changes are listed in a transparent way.

Identifiants

pubmed: 37882528
doi: 10.1128/jcm.00873-23
pmc: PMC10662369
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0087323

Déclaration de conflit d'intérêts

The authors declare no conflict of interest.

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Auteurs

Sybren de Hoog (S)

Radboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.
Foundation Atlas of Clinical Fungi , Hilversum, the Netherlands.
Department of Dermatology and Venereology, Peking University First Hospital , Beijing, China.
Department of Basic Pathology, Federal University of Paraná , Curitiba, Brazil.
Research Center for Medical Mycology, Peking University , Beijing, China.
International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.

Thomas J Walsh (TJ)

International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
Center for Innovative Therapeutics and Diagnostics , Richmond, Virginia, USA.
University of Maryland School of Medicine , Baltimore, Maryland, USA.
Nomenclature Committee for Fungi, International Mycological Association (IMA).
Fungal Diagnostics Laboratory Consortium (FDLC).
Mycoses Study Group, Education and Research Consortium (MSG-ERC).
European Confederation of Medical Mycology (ECMM).
Clinical and Laboratory Standards Institute (CLSI).
Medical Mycological Society of the Americas (MMSA).
ISHAM Working Group on Diagnostics.

Sarah A Ahmed (SA)

Radboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.
Foundation Atlas of Clinical Fungi , Hilversum, the Netherlands.
International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.

Ana Alastruey-Izquierdo (A)

International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
Mycology Reference Laboratory, Spanish National Centre for Microbiology , Madrid, Spain.
Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.

Barbara D Alexander (BD)

Fungal Diagnostics Laboratory Consortium (FDLC).
Departments of Medicine and Pathology, Duke University , Durham, North Carolina, USA.

Maiken Cavling Arendrup (MC)

Department of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark; Department of Clinical Microbiology, Copenhagen University Hospital Rigshospitalet , Copenhagen, Denmark.
Antifungal Susceptibility Testing Subcommittee of European Committee of Antimicrobial Susceptibility Testing (EUCAST-AFST).

Esther Babady (E)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical Microbiology Service, Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center , New York, USA.

Feng-Yan Bai (F-Y)

Mycology Committee of Chinese Society for Microbiology.
Institute of Microbiology, State Key Laboratory of Mycology, Chinese Academy of Sciences , Beijing, China.
Medical Mycology Society of Chinese Medicine and Education Association.
Asia Pacific Society for Medical Mycology.
ISHAM Working Group Veterinary Mycology and One Health.
Mycological Society of China (MSC).

Joan-Miquel Balada-Llasat (J-M)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical Microbiology at The Ohio State University Wexner Medical Center , Columbus, Ohio, USA.

Andrew Borman (A)

National Mycology Reference Laboratory, Public Health England , Bristol, United Kingdom.

Anuradha Chowdhary (A)

Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
Department of Microbiology, National Reference Laboratory for Antimicrobial Resistance in Fungal Pathogens, Medical Mycology Unit, Vallabhbhai Patel Chest Institute, University of Delhi , Delhi, India.

Andrew Clark (A)

Fungal Diagnostics Laboratory Consortium (FDLC).
University of Texas Southwestern Medical Center , Dallas, Texas, USA.

Robert C Colgrove (RC)

Division of Infectious Diseases, Mount Auburn Hospital , Cambridge, Massachusetts, USA.
Infectious Diseases Society of America (ISDA).

Oliver A Cornely (OA)

European Confederation of Medical Mycology (ECMM).
Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
University of Cologne, Faculty of Medicine, Institute of Translational Research, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases , Cologne, Germany.
Department I of Internal Medicine, University of Cologne, Excellence Center for Medical Mycology , Cologne, Germany.

Tanis C Dingle (TC)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical and Laboratory Standards Institute (CLSI).
Alberta Precision Laboratories, Public Health Laboratory , Calgary, Alberta, Canada.

Philippe J Dufresne (PJ)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical and Laboratory Standards Institute (CLSI).
Mycology Department, Laboratoire de Santé Publique du Québec, Institut National de Santé Publique du Québec (INSPQ), Sainte-Anne-de-Bellevue , Québec, Canada.

Jeff Fuller (J)

Fungal Diagnostics Laboratory Consortium (FDLC).
Department of Pathology and Laboratory Medicine, London Health Sciences Center , London, Ontario, Canada.

Jean-Pierre Gangneux (J-P)

European Confederation of Medical Mycology (ECMM).
Department of Mycology, Centre Hospitalier Universitaire de Rennes , Rennes, France.

Connie Gibas (C)

University of Texas Health Science Center , San Antonio, Texas, USA.

Heather Glasgow (H)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical and Molecular Microbiology, Department of Pathology, St. Jude Children's Research Hospital , Memphis, Tennessee, USA.

Yvonne Gräser (Y)

Department of Parasitology (Charité), Institute of Microbiology and Hygiene, Humboldt University , Berlin, Germany.

Jacques Guillot (J)

ISHAM Working Group Veterinary Mycology and One Health.
Onoris, École Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique , Nantes, France.

Andreas H Groll (AH)

Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
Infectious Disease Research Program, Department of Pediatric Hematology and Oncology and Center for Bone Marrow Transplantation, University Children's Hospital , Münster, Germany.

Gerhard Haase (G)

Laboratory Diagnostic Center, RWTH Aachen University Hospital , Aachen, Germany.

Kimberly Hanson (K)

Fungal Diagnostics Laboratory Consortium (FDLC).
University of Utah School of Medicine , Salt Lake City, Utah, USA.

Amanda Harrington (A)

Fungal Diagnostics Laboratory Consortium (FDLC).
Loyola University Health System, Loyola University Chicago , Maywood, Illinois, USA.

David L Hawksworth (DL)

Royal Botanic Gardens, Kew , Richmond, Surrey, United Kingdom.
Natural History Museum , London, United Kingdom.
University of Southampton , Southampton, United Kingdom.
Jilin Agricultural University , Chanchung, China.
General Committee for Nomenclature, International Botanical Congress (IBC).
Advisory Board of International Commission on the Taxonomy of Fungi (ICTF).

Randall T Hayden (RT)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical and Laboratory Standards Institute (CLSI).
Clinical and Molecular Microbiology, Department of Pathology, St. Jude Children's Research Hospital , Memphis, Tennessee, USA.

Martin Hoenigl (M)

Mycoses Study Group, Education and Research Consortium (MSG-ERC).
European Confederation of Medical Mycology (ECMM).
Division of Infectious Diseases, Medical University of Graz , Graz, Austria.
Translational Medical Mycology Research Unit, ECMM Excellence Center for Medical Mycology, Medical University of Graz , Graz, Austria.
European Hematology Association, Specialized Working Group for Infections in Hematology , The Hague, the Netherlands.

Vit Hubka (V)

Department of Botany, Charles University , Prague, Czechia.

Kristie Johnson (K)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical Microbiology Laboratory, UMMC Laboratories of Pathology, University of Maryland School of Medicine , Baltimore, Maryland, USA.

Julianne V Kus (JV)

Fungal Diagnostics Laboratory Consortium (FDLC).
Public Health Ontario , Toronto, Ontario, Canada.
Department of Laboratory Medicine and Pathobiology, Canada and University of Toronto , Toronto, Ontario, Canada.

Ruoyu Li (R)

Department of Dermatology and Venereology, Peking University First Hospital , Beijing, China.
Research Center for Medical Mycology, Peking University , Beijing, China.
ISHAM Working Group on Diagnostics.
Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
Antifungal Susceptibility Testing Subcommittee of European Committee of Antimicrobial Susceptibility Testing (EUCAST-AFST).
Medical Mycology Society of Chinese Medicine and Education Association.

Jacques F Meis (JF)

Radboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.
ISHAM Working Group on Diagnostics.
University of Cologne, Faculty of Medicine, Institute of Translational Research, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases , Cologne, Germany.
Department I of Internal Medicine, University of Cologne, Excellence Center for Medical Mycology , Cologne, Germany.

Michaela Lackner (M)

International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck , Innsbruck, Austria.

Fanny Lanternier (F)

Institut Pasteur , Paris, France.

Sixto M Leal (SM)

Fungal Diagnostics Laboratory Consortium (FDLC).
Mycoses Study Group, Education and Research Consortium (MSG-ERC).
Clinical and Laboratory Standards Institute (CLSI).
University of Alabama at Birmingham , Birmingham, Alabama, USA.

Francesca Lee (F)

Fungal Diagnostics Laboratory Consortium (FDLC).
University of Texas Southwestern Medical Center , Dallas, Texas, USA.

Shawn R Lockhart (SR)

Fungal Diagnostics Laboratory Consortium (FDLC).
Centers for Disease Control and Prevention , Atlanta, Georgia, USA.

Paul Luethy (P)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical Microbiology Laboratory, UMMC Laboratories of Pathology, University of Maryland School of Medicine , Baltimore, Maryland, USA.

Isabella Martin (I)

Fungal Diagnostics Laboratory Consortium (FDLC).
Dartmouth Health , Lebanon, New Hampshire, USA.

Kyung J Kwon-Chung (KJ)

National Institute of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, Maryland, USA.

Wieland Meyer (W)

Nomenclature Committee for Fungi, International Mycological Association (IMA).
Westerdijk Fungal Biodiversity Institute , Utrecht, The Netherlands.

M Hong Nguyen (MH)

Fungal Diagnostics Laboratory Consortium (FDLC).
Mycoses Study Group, Education and Research Consortium (MSG-ERC).
Medical Mycological Society of the Americas (MMSA).
University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA.

Luis Ostrosky-Zeichner (L)

Mycoses Study Group, Education and Research Consortium (MSG-ERC).
University of Texas Health Science Center at Houston , Houston, Texas, USA.

Elizabeth Palavecino (E)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical Microbiology Laboratory, Wake Forest Baptist Medical Center , Winston-Salem, North Carolina, USA.

Preeti Pancholi (P)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical Microbiology at The Ohio State University Wexner Medical Center , Columbus, Ohio, USA.

Peter G Pappas (PG)

Mycoses Study Group, Education and Research Consortium (MSG-ERC).
University of Alabama at Birmingham , Birmingham, Alabama, USA.

Gary W Procop (GW)

Fungal Diagnostics Laboratory Consortium (FDLC).
Clinical and Laboratory Standards Institute (CLSI).
The American Board of Pathology , Tampa, Florida, USA.
American Board of Pathology (ABP).

Scott A Redhead (SA)

Nomenclature Committee for Fungi, International Mycological Association (IMA).
National Mycological Herbarium, Ottawa Research and Development Centre, Science and Technology Branch, Agriculture & Agri-Food Canada , Ottawa, Ontario, Canada.

Daniel D Rhoads (DD)

Cleveland Clinic Lerner College of Medicine, Case Western Reserve University , Cleveland, Ohio, USA.
Department of Laboratory Medicine, Cleveland Clinic , Cleveland, Ohio, USA.
Infection Biology Program, Lerner Research Institute, Cleveland Clinic , Cleveland, Ohio, USA.

Stefan Riedel (S)

Fungal Diagnostics Laboratory Consortium (FDLC).
Beth Israel Deaconess Medical Center , Boston, Massachusetts, USA.

Bryan Stevens (B)

Fungal Diagnostics Laboratory Consortium (FDLC).
University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA.

Kaede Ota Sullivan (KO)

Fungal Diagnostics Laboratory Consortium (FDLC).
Lewis Katz School of Medicine, Temple University , Philadelphia, Pennsylvania, USA.

Paschalis Vergidis (P)

Fungal Diagnostics Laboratory Consortium (FDLC).
Mayo Clinic , Rochester, Minnesota, USA.

Emmanuel Roilides (E)

International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
European Confederation of Medical Mycology (ECMM).
Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
Hippokration Hospital , Thessaloniki, Greece.

Amir Seyedmousavi (A)

Fungal Diagnostics Laboratory Consortium (FDLC).
Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
ISHAM Working Group Veterinary Mycology and One Health.
Microbiology Service, Department of Laboratory Medicine, Clinical Center, National Institutes of Health , Bethesda, Maryland, USA.

Lili Tao (L)

Fungal Diagnostics Laboratory Consortium (FDLC).
Vanderbilt University Medical Center , Nashville, Tennessee, USA.

Vania A Vicente (VA)

Department of Basic Pathology, Federal University of Paraná , Curitiba, Brazil.

Roxana G Vitale (RG)

Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET) , Buenos Aires, Argentina.
Unidad de Parasitología, Sector Micología, Hospital J.M. Ramos Mejía , Buenos Aires, Argentina.

Qi-Ming Wang (Q-M)

Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University , Baoding, China.

Nancy L Wengenack (NL)

Fungal Diagnostics Laboratory Consortium (FDLC).
Mayo Clinic , Rochester, Minnesota, USA.

Lars Westblade (L)

Fungal Diagnostics Laboratory Consortium (FDLC).
Department of Pathology and Laboratory Medicine, Weill Cornell Medical College , New York, USA.

Nathan Wiederhold (N)

Fungal Diagnostics Laboratory Consortium (FDLC).
Mycoses Study Group, Education and Research Consortium (MSG-ERC).
Clinical and Laboratory Standards Institute (CLSI).
Medical Mycological Society of the Americas (MMSA).
University of Texas Health Science Center , San Antonio, Texas, USA.

Lewis White (L)

Public Health Wales Microbiology , Cardiff, United Kingdom.

Christina M Wojewoda (CM)

Department of Pathology and Laboratory Medicine, University of Vermont Medical Center , Burlington, Vermont, USA.

Sean X Zhang (SX)

International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
Fungal Diagnostics Laboratory Consortium (FDLC).
Johns Hopkins University School of Medicine , Baltimore, Maryland, USA.

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