A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC.
fungi
nomenclature
taxonomy
Journal
Journal of clinical microbiology
ISSN: 1098-660X
Titre abrégé: J Clin Microbiol
Pays: United States
ID NLM: 7505564
Informations de publication
Date de publication:
21 Nov 2023
21 Nov 2023
Historique:
medline:
27
11
2023
pubmed:
26
10
2023
entrez:
26
10
2023
Statut:
ppublish
Résumé
The rapid pace of name changes of medically important fungi is creating challenges for clinical laboratories and clinicians involved in patient care. We describe two sources of name change which have different drivers, at the species versus the genus level. Some suggestions are made here to reduce the number of name changes. We urge taxonomists to provide diagnostic markers of taxonomic novelties. Given the instability of phylogenetic trees due to variable taxon sampling, we advocate to maintain genera at the largest possible size. Reporting of identified species in complexes or series should where possible comprise both the name of the overarching species and that of the molecular sibling, often cryptic species. Because the use of different names for the same species will be unavoidable for many years to come, an open access online database of the names of all medically important fungi, with proper nomenclatural designation and synonymy, is essential. We further recommend that while taxonomic discovery continues, the adaptation of new name changes by clinical laboratories and clinicians be reviewed routinely by a standing committee for validation and stability over time, with reference to an open access database, wherein reasons for changes are listed in a transparent way.
Identifiants
pubmed: 37882528
doi: 10.1128/jcm.00873-23
pmc: PMC10662369
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0087323Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
Références
J Clin Microbiol. 2015 Sep;53(9):2990-3000
pubmed: 26179305
IMA Fungus. 2020 Jul 10;11:14
pubmed: 32714773
Mycopathologia. 2020 Dec;185(6):1085-1089
pubmed: 33119817
PLoS Negl Trop Dis. 2023 Apr 27;17(4):e0011220
pubmed: 37104274
Phytopathology. 2021 Jul;111(7):1064-1079
pubmed: 33200960
Stud Mycol. 2021 Aug 17;98:100116
pubmed: 34466168
Nat Microbiol. 2021 Jul;6(7):971
pubmed: 34045712
Appl Environ Microbiol. 2017 Dec 15;84(1):
pubmed: 29030446
Mycopathologia. 2017 Feb;182(1-2):5-31
pubmed: 27783317
Stud Mycol. 2011 Nov 15;70(1):159-83
pubmed: 22308048
Persoonia. 2018 Dec;41:142-174
pubmed: 30728603
Stud Mycol. 2016 Sep;85:199-213
pubmed: 28082760
Infect Genet Evol. 2018 Dec;66:245-255
pubmed: 30342094
Syst Biol. 2009 Apr;58(2):224-39
pubmed: 20525580
Open Forum Infect Dis. 2023 Jan 07;10(1):ofac559
pubmed: 36632423
Fungal Biol. 2016 Feb;120(2):137-46
pubmed: 26781369
Mycopathologia. 2020 Feb;185(1):113-122
pubmed: 31278475
Front Microbiol. 2022 Aug 23;13:960190
pubmed: 36081804
Int J Mol Sci. 2021 Jan 15;22(2):
pubmed: 33467563
J Clin Microbiol. 2021 Jan 21;59(2):
pubmed: 33028600
J Mycol Med. 2016 Dec;26(4):403-405
pubmed: 27091579
Fungal Genet Biol. 2000 Oct;31(1):21-32
pubmed: 11118132
Persoonia. 2015 Dec;35:242-63
pubmed: 26823635
BMC Evol Biol. 2007 Aug 09;7:134
pubmed: 17688684
Med Mycol. 2006 May;44(3):199-209
pubmed: 16702098
Antonie Van Leeuwenhoek. 1979;45(1):119-27
pubmed: 575971
IMA Fungus. 2019 Dec 27;10:21
pubmed: 32647625
Fungal Genet Biol. 2019 Nov;132:103262
pubmed: 31415905
IMA Fungus. 2015 Jun;6(1):207-14
pubmed: 26203424
mSphere. 2020 Sep 16;5(5):
pubmed: 32938701
MycoKeys. 2022 Feb 01;86:147-176
pubmed: 35145340
Elife. 2021 Aug 02;10:
pubmed: 34338631
mSphere. 2017 Aug 30;2(4):
pubmed: 28875175
Annu Rev Microbiol. 2020 Sep 8;74:291-313
pubmed: 32660385
Lancet Infect Dis. 2013 May;13(5):385-6
pubmed: 23618329
J Clin Microbiol. 2015 Apr;53(4):1056-62
pubmed: 25297326
Stud Mycol. 2022 Dec;102:95-132
pubmed: 36760462
Med Mycol. 2010 Jun;48(4):629-34
pubmed: 20392147
Fungal Genet Biol. 2018 Sep;118:45-53
pubmed: 30016701
J Fungi (Basel). 2022 Jul 24;8(8):
pubmed: 35893134
New Phytol. 2021 Mar;229(5):2470-2491
pubmed: 33113229
IMA Fungus. 2011 Jun;2(1):105-12
pubmed: 22679594
PhytoKeys. 2014 Aug 29;(41):1-289
pubmed: 25197229
Persoonia. 2016 Jun;36:1-36
pubmed: 27616786
Mol Plant Pathol. 2016 Dec;17(9):1455-1466
pubmed: 27271322
Genes (Basel). 2020 Jan 16;11(1):
pubmed: 31963231
Stud Mycol. 2020 Jun 27;95:5-169
pubmed: 32855739
Stud Mycol. 2022 Dec;102:53-93
pubmed: 36760461
Stud Mycol. 2006;55:289-98
pubmed: 18490987
Mycoses. 2019 Nov;62(11):1084-1091
pubmed: 31444823
IMA Fungus. 2021 Jul 13;12(1):18
pubmed: 34256869
Stud Mycol. 2016 Jun;84:145-224
pubmed: 28082757
Phytopathology. 2013 May;103(5):400-8
pubmed: 23379853
mSphere. 2017 Jan 11;2(1):
pubmed: 28101535
J Clin Microbiol. 2021 Feb 18;59(3):
pubmed: 33268539