Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.
Capripoxvirus
lumpy skin disease virus
molecular epidemiology
phylogeography
recombination
Journal
Journal of virology
ISSN: 1098-5514
Titre abrégé: J Virol
Pays: United States
ID NLM: 0113724
Informations de publication
Date de publication:
30 Nov 2023
30 Nov 2023
Historique:
medline:
1
12
2023
pubmed:
31
10
2023
entrez:
31
10
2023
Statut:
ppublish
Résumé
Lumpy skin disease virus (LSDV) has a complex epidemiology involving multiple strains, recombination, and vaccination. Its DNA genome provides limited genetic variation to trace outbreaks in space and time. Sequencing of LSDV whole genomes has also been patchy at global and regional scales. Here, we provide the first fine-grained whole genome sequence sampling of a constrained LSDV outbreak (southeastern Europe, 2015-2017), which we analyze along with global publicly available genomes. We formally evaluate the past occurrence of recombination events as well as the temporal signal that is required for calibrating molecular clock models and subsequently conduct a time-calibrated spatially explicit phylogeographic reconstruction. Our study further illustrates the importance of accounting for recombination events before reconstructing global and regional dynamics of DNA viruses. More LSDV whole genomes from endemic areas are needed to obtain a comprehensive understanding of global LSDV dispersal dynamics.
Identifiants
pubmed: 37905838
doi: 10.1128/jvi.01394-23
pmc: PMC10688313
doi:
Substances chimiques
DNA, Viral
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0139423Subventions
Organisme : European Commission (EC)
ID : 773701
Organisme : Fonds De La Recherche Scientifique - FNRS (FNRS)
ID : 4515.22
Organisme : Fonds Wetenschappelijk Onderzoek (FWO)
ID : G098321N
Organisme : European Commission (EC)
ID : 874850
Organisme : European Commission (EC)
ID : 725422
Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
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