Anemonefishes: A model system for evolutionary genomics.

Amphiprion adaptive radiation chromosome-scale assembly clownfish genome pigmentation proteomics transcriptomics

Journal

F1000Research
ISSN: 2046-1402
Titre abrégé: F1000Res
Pays: England
ID NLM: 101594320

Informations de publication

Date de publication:
2023
Historique:
accepted: 20 10 2023
medline: 7 11 2023
pubmed: 6 11 2023
entrez: 6 11 2023
Statut: epublish

Résumé

Anemonefishes are an iconic group of coral reef fish particularly known for their mutualistic relationship with sea anemones. This mutualism is especially intriguing as it likely prompted the rapid diversification of anemonefish. Understanding the genomic architecture underlying this process has indeed become one of the holy grails of evolutionary research in these fishes. Recently, anemonefishes have also been used as a model system to study the molecular basis of highly complex traits such as color patterning, social sex change, larval dispersal and life span. Extensive genomic resources including several high-quality reference genomes, a linkage map, and various genetic tools have indeed enabled the identification of genomic features controlling some of these fascinating attributes, but also provided insights into the molecular mechanisms underlying adaptive responses to changing environments. Here, we review the latest findings and new avenues of research that have led to this group of fish being regarded as a model for evolutionary genomics.

Identifiants

pubmed: 37928172
doi: 10.12688/f1000research.130752.2
pmc: PMC10624958
doi:

Types de publication

Journal Article Review Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

204

Informations de copyright

Copyright: © 2023 Herrera M et al.

Déclaration de conflit d'intérêts

No competing interests were disclosed.

Références

PLoS One. 2021 Dec 15;16(12):e0261331
pubmed: 34910772
Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13245-13250
pubmed: 27799530
Curr Biol. 2013 Oct 7;23(19):1884-8
pubmed: 24035541
BMC Evol Biol. 2012 Nov 02;12:212
pubmed: 23122007
Mol Phylogenet Evol. 2019 Oct;139:106526
pubmed: 31158486
Dev Dyn. 2021 Nov;250(11):1651-1667
pubmed: 33899313
BMC Genomics. 2018 Oct 16;19(1):749
pubmed: 30326831
Annu Rev Neurosci. 2017 Jul 25;40:125-147
pubmed: 28375767
Microbiome. 2021 May 17;9(1):109
pubmed: 34001275
Proc Biol Sci. 2015 Nov 22;282(1819):
pubmed: 26582017
Ecol Evol. 2012 Jul;2(7):1592-604
pubmed: 22957165
BMC Genomics. 2017 May 2;18(1):341
pubmed: 28464822
G3 (Bethesda). 2022 May 6;12(5):
pubmed: 35353192
Cell Res. 2005 Jul;15(7):483-94
pubmed: 16045811
Proteomics. 2010 Feb;10(4):858-72
pubmed: 19953554
Genes (Basel). 2018 Feb 14;9(2):
pubmed: 29443947
Evodevo. 2020 Oct 7;11:20
pubmed: 33042514
Gigascience. 2018 Mar 1;7(3):1-6
pubmed: 29342277
BMC Ecol. 2018 Apr 12;18(1):14
pubmed: 29650003
OMICS. 2014 Feb;18(2):98-110
pubmed: 24380445
Mol Biol Rep. 2020 Feb;47(2):1521-1525
pubmed: 31749119
Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1785-90
pubmed: 23307812
Behav Ecol. 2022 Nov 01;34(1):19-32
pubmed: 36789393
Proc Biol Sci. 2016 Mar 30;283(1827):20160277
pubmed: 27030417
G3 (Bethesda). 2018 May 4;8(5):1795-1806
pubmed: 29599177
Comp Biochem Physiol A Mol Integr Physiol. 2010 Aug;156(4):407-15
pubmed: 20348005
Toxicon. 1994 Sep;32(9):1059-68
pubmed: 7801342
Trends Genet. 2016 Dec;32(12):815-827
pubmed: 27836208
Nature. 2020 Oct;586(7827):75-79
pubmed: 32848251
Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6543-9
pubmed: 15851679
J Exp Biol. 2013 Mar 15;216(Pt 6):970-6
pubmed: 23447664
G3 (Bethesda). 2023 Mar 9;13(3):
pubmed: 36626199
Nat Methods. 2017 Sep;14(9):921-927
pubmed: 28825704
J Proteomics. 2018 Oct 30;189:11-22
pubmed: 29501709
J Fish Biol. 2010 Aug;77(3):769-77
pubmed: 20701653
Front Immunol. 2020 Mar 24;11:512
pubmed: 32265939
Proc Biol Sci. 2021 Dec 8;288(1964):20211931
pubmed: 34875194
Front Mol Biosci. 2021 May 17;8:660959
pubmed: 34079817
BMC Neurosci. 2010 Aug 02;11:90
pubmed: 20678210
Nat Commun. 2017 Aug 21;8(1):291
pubmed: 28827567
Curr Opin Genet Dev. 2019 Aug;57:31-38
pubmed: 31421397
Genome Biol. 2020 Feb 7;21(1):30
pubmed: 32033565
Biol Sex Differ. 2015 Nov 25;6:26
pubmed: 26613014
Sci Rep. 2019 Nov 11;9(1):16459
pubmed: 31712572
Genome Biol Evol. 2021 Oct 1;13(10):
pubmed: 34375382
Nature. 2003 Jul 10;424(6945):145-6
pubmed: 12853944
Genome Biol Evol. 2023 Jul 3;15(7):
pubmed: 37226990
Trends Ecol Evol. 2017 Sep;32(9):665-680
pubmed: 28818341
Brief Bioinform. 2017 Mar 1;18(2):205-214
pubmed: 26891983
J Exp Biol. 2018 Jan 29;221(Pt 2):
pubmed: 29378879
Nat Ecol Evol. 2018 Jun;2(6):944-955
pubmed: 29434349
J Exp Zool B Mol Dev Evol. 2021 Jun;336(4):376-385
pubmed: 33539680
Mol Ecol Resour. 2020 Nov;20(6):1647-1657
pubmed: 32687632
Pigment Cell Melanoma Res. 2019 May;32(3):391-402
pubmed: 30633441
PLoS One. 2021 May 17;16(5):e0251653
pubmed: 33999965
Nature. 2016 Oct 13;538(7624):257-259
pubmed: 27706136
Genome Biol Evol. 2019 Mar 1;11(3):869-882
pubmed: 30830203
Mol Cell Proteomics. 2012 Jun;11(6):O111.016717
pubmed: 22261725
Nature. 2021 Apr;592(7856):737-746
pubmed: 33911273
Annu Rev Cell Dev Biol. 2021 Oct 6;37:441-468
pubmed: 34351785
Curr Biol. 2005 Jul 26;15(14):1314-8
pubmed: 16051176
Proteomics. 2013 Apr;13(8):1247-56
pubmed: 23322582
Brief Bioinform. 2018 Mar 1;19(2):286-302
pubmed: 27881428
Evodevo. 2021 Jun 19;12(1):8
pubmed: 34147131
Heredity (Edinb). 2005 Mar;94(3):280-94
pubmed: 15674378
Sci Rep. 2017 Jul 26;7(1):6547
pubmed: 28747629
Anal Bioanal Chem. 2012 Sep;404(4):1011-27
pubmed: 22451173
Cell. 2016 Apr 21;165(3):535-50
pubmed: 27104977
Annu Rev Genet. 2019 Dec 3;53:505-530
pubmed: 31509458
Biol Open. 2013 Jul 17;2(9):907-15
pubmed: 24143277
Sci Rep. 2022 Jul 18;12(1):11238
pubmed: 35851041
Biol Lett. 2020 Feb;16(2):20190738
pubmed: 32019466
Sex Dev. 2021;15(1-3):108-121
pubmed: 34111868
Horm Behav. 2019 Jun;112:65-76
pubmed: 30959023
Sci Rep. 2018 Mar 6;8(1):4073
pubmed: 29511241
Mol Ecol Resour. 2020 Mar;20(2):520-530
pubmed: 31887246
Comp Biochem Physiol B Biochem Mol Biol. 2012 Feb;161(2):124-33
pubmed: 22036613
Proc Biol Sci. 2018 Jan 10;285(1870):
pubmed: 29298932
Sci Rep. 2015 Oct 13;5:15119
pubmed: 26459884
PLoS One. 2015 Sep 14;10(9):e0137726
pubmed: 26367311
Curr Top Dev Biol. 2019;134:71-117
pubmed: 30999982
Mar Drugs. 2018 Jan 24;16(2):
pubmed: 29364843
Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2122154119
pubmed: 35858398
Mol Ecol. 2021 Oct;30(20):5105-5118
pubmed: 34402113
Cell Rep. 2023 Jul 25;42(7):112661
pubmed: 37347665
Int J Mol Sci. 2022 Aug 13;23(16):
pubmed: 36012348
Sci Aging Knowledge Environ. 2006 Jun 28;2006(10):pe20
pubmed: 16807484
Proc Biol Sci. 2016 May 25;283(1831):
pubmed: 27226472
Comp Biochem Physiol B Biochem Mol Biol. 2008 Jan;149(1):29-37
pubmed: 17919957
Comp Biochem Physiol B Biochem Mol Biol. 2010 Oct;157(2):198-204
pubmed: 20601066
Cell Microbiol. 2003 Apr;5(4):203-23
pubmed: 12675679
Comp Biochem Physiol A Mol Integr Physiol. 2010 Feb;155(2):237-44
pubmed: 19913632
Mol Ecol. 2020 Dec;29(24):4956-4969
pubmed: 33049090
Sci Adv. 2020 Mar 18;6(12):eaay3423
pubmed: 32206711
Sci Rep. 2016 Oct 17;6:35461
pubmed: 27748421
Gen Comp Endocrinol. 2016 Sep 1;235:89-99
pubmed: 27288637
J Fish Biol. 2009 Dec;75(9):2287-98
pubmed: 20738687
Environ Pollut. 2023 Jan 15;317:120792
pubmed: 36473638
BMC Evol Biol. 2019 Apr 11;19(1):89
pubmed: 30975078
Proc Biol Sci. 2007 Feb 22;274(1609):591-8
pubmed: 17476781
Mol Ecol Resour. 2018 Feb 17;:
pubmed: 29455459
Zoological Lett. 2015 Sep 29;1:30
pubmed: 26605075
DNA Res. 2022 Jun 25;29(4):
pubmed: 35861387
Mol Phylogenet Evol. 2008 Oct;49(1):268-76
pubmed: 18513996
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5693-7
pubmed: 19307588
Sci Rep. 2021 Mar 24;11(1):6801
pubmed: 33762724
Mol Ecol. 2018 Nov;27(22):4516-4528
pubmed: 30267545
Sci Rep. 2019 Oct 28;9(1):15399
pubmed: 31659260
Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):
pubmed: 34031155
Trends Genet. 2019 Apr;35(4):265-278
pubmed: 30819536
Fish Physiol Biochem. 2013 Jun;39(3):417-29
pubmed: 22926760
BMC Biol. 2018 Sep 5;16(1):90
pubmed: 30180844
Nat Biotechnol. 2013 Dec;31(12):1119-25
pubmed: 24185095
Proc Biol Sci. 2022 Oct 12;289(1984):20221576
pubmed: 36196541
Am Nat. 2013 Jan;181(1):94-113
pubmed: 23234848
Nat Commun. 2021 Feb 3;12(1):775
pubmed: 33536437
Nature. 2014 Sep 18;513(7518):375-381
pubmed: 25186727
Sci Rep. 2019 Dec 20;9(1):19491
pubmed: 31862916
Dev Growth Differ. 2021 Dec;63(9):459-466
pubmed: 34786704
J Evol Biol. 2018 Oct;31(10):1558-1571
pubmed: 29978521
Mol Ecol Resour. 2019 May;19(3):567-569
pubmed: 31004471
Nat Commun. 2021 Mar 4;12(1):1447
pubmed: 33664263
Nat Biotechnol. 2010 Jul;28(7):710-21
pubmed: 20622845
Mol Ecol Resour. 2022 Oct;22(7):2701-2712
pubmed: 35593537
Gene. 2006 Dec 30;385:19-27
pubmed: 17084996
Toxicon. 2009 Dec 15;54(8):1071-4
pubmed: 19268681
Science. 1998 Mar 27;279(5359):2115-8
pubmed: 9516114
Nature. 2016 Sep 14;537(7620):347-55
pubmed: 27629641
Mol Ecol Resour. 2019 May;19(3):570-585
pubmed: 30203521
Glob Chang Biol. 2022 May;28(9):3007-3022
pubmed: 35238117
Trends Ecol Evol. 2014 Jan;29(1):51-63
pubmed: 24139972
Anat Rec (Hoboken). 2014 Aug;297(8):1349-53
pubmed: 24810158
Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36
pubmed: 23391737
J Evol Biol. 2015 Jan;28(1):205-22
pubmed: 25414094
Dev Dyn. 2019 Jul;248(7):545-568
pubmed: 31070818
BMC Evol Biol. 2014 Nov 30;14:245
pubmed: 25433367

Auteurs

Marcela Herrera (M)

Marine Eco-Evo-Devo Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, 904-0495, Japan.

Timothy Ravasi (T)

Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, 904-0495, Japan.
Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, 4811, Australia.

Vincent Laudet (V)

Marine Eco-Evo-Devo Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, 904-0495, Japan.
Marine Research Station, Institute of Cellular and Organismic Biology (ICOB), Academia Sinica, 23-10, Dah-Uen Rd, Jiau Shi I-Lan 262, Taiwan.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH