Fast satellite DNA evolution in Nothobranchius annual killifishes.
Centromere drive
Constitutive heterochromatin
RepeatExplorer
Repetitive sequences
satDNA
Journal
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology
ISSN: 1573-6849
Titre abrégé: Chromosome Res
Pays: Netherlands
ID NLM: 9313452
Informations de publication
Date de publication:
21 Nov 2023
21 Nov 2023
Historique:
received:
20
05
2023
accepted:
28
10
2023
revised:
04
10
2023
medline:
22
11
2023
pubmed:
21
11
2023
entrez:
20
11
2023
Statut:
epublish
Résumé
Satellite DNA (satDNA) is a rapidly evolving class of tandem repeats, with some monomers being involved in centromere organization and function. To identify repeats associated with (peri)centromeric regions, we investigated satDNA across Southern and Coastal clades of African annual killifishes of the genus Nothobranchius. Molecular cytogenetic and bioinformatic analyses revealed that two previously identified satellites, designated here as NkadSat01-77 and NfurSat01-348, are associated with (peri)centromeres only in one lineage of the Southern clade. NfurSat01-348 was, however, additionally detected outside centromeres in three members of the Coastal clade. We also identified a novel satDNA, NrubSat01-48, associated with (peri)centromeres in N. foerschi, N. guentheri, and N. rubripinnis. Our findings revealed fast turnover of satDNA associated with (peri)centromeres and different trends in their evolution in two clades of the genus Nothobranchius.
Identifiants
pubmed: 37985497
doi: 10.1007/s10577-023-09742-8
pii: 10.1007/s10577-023-09742-8
pmc: PMC10661780
doi:
Substances chimiques
DNA, Satellite
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
33Subventions
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : Grantová Agentura České Republiky
ID : 19-22346Y
Organisme : e-Infrastruktura CZ
ID : e-INFRA LM2018140
Organisme : e-Infrastruktura CZ
ID : e-INFRA LM2018140
Organisme : e-Infrastruktura CZ
ID : e-INFRA LM2018140
Organisme : e-Infrastruktura CZ
ID : e-INFRA LM2018140
Organisme : Projects of Large Research, Development and Innovations Infrastructures and the ELIXIR-CZ project
ID : LM2018131
Organisme : Projects of Large Research, Development and Innovations Infrastructures and the ELIXIR-CZ project
ID : LM2018131
Organisme : Projects of Large Research, Development and Innovations Infrastructures and the ELIXIR-CZ project
ID : LM2018131
Organisme : Projects of Large Research, Development and Innovations Infrastructures and the ELIXIR-CZ project
ID : LM2018131
Organisme : Spanish Ministry of Universities with European Union's NextGenerationEU funds
ID : UJAR10MS
Organisme : RVO of IAPG CAS
ID : 67985904
Organisme : RVO of IAPG CAS
ID : 67985904
Organisme : RVO of IAPG CAS
ID : 67985904
Organisme : Charles University Research Centre program
ID : 204069
Informations de copyright
© 2023. The Author(s).
Références
Genome Biol. 2013 Jan 30;14(1):R10
pubmed: 23363705
Sci Rep. 2016 Jul 07;6:28333
pubmed: 27385065
Genome Dyn. 2012;7:126-52
pubmed: 22759817
Curr Opin Genet Dev. 2018 Apr;49:70-78
pubmed: 29579574
Genes (Basel). 2017 Sep 18;8(9):
pubmed: 28926993
Mol Ecol Resour. 2021 Feb;21(2):543-560
pubmed: 33035394
Mol Biol Evol. 2020 Aug 1;37(8):2341-2356
pubmed: 32259249
Aging Cell. 2018 Jun;17(3):e12757
pubmed: 29573324
Genome Biol. 2009 Feb 11;10(2):R16
pubmed: 19210790
Gigascience. 2019 Apr 1;8(4):
pubmed: 30942871
Cytogenet Cell Genet. 1997;79(3-4):266-71
pubmed: 9605868
Evolution. 2019 Mar;73(3):511-523
pubmed: 30690715
Mol Phylogenet Evol. 2021 May;158:106988
pubmed: 33059071
Biol Rev Camb Philos Soc. 2016 May;91(2):511-33
pubmed: 25923786
Comp Cytogenet. 2023 Jan 31;17(1):13-29
pubmed: 37305809
Evolution. 2017 Feb;71(2):386-402
pubmed: 27859247
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6542-7
pubmed: 15084747
Cell. 2019 Aug 22;178(5):1132-1144.e10
pubmed: 31402175
Mol Biol Evol. 2022 Aug 3;39(8):
pubmed: 35881460
J Fish Biol. 2023 Sep 4;:
pubmed: 37661806
Evodevo. 2013 Sep 04;4(1):24
pubmed: 24007640
Chromosome Res. 2022 Dec;30(4):309-333
pubmed: 36208359
Evodevo. 2020 Dec 15;11(1):25
pubmed: 33323125
Chromosoma. 2010 Oct;119(5):495-503
pubmed: 20393739
Elife. 2019 Sep 16;8:
pubmed: 31524597
Theor Appl Genet. 1986 Feb;71(5):703-7
pubmed: 24247605
Chromosome Res. 2008;16(7):919-33
pubmed: 18688733
BMC Biol. 2022 Nov 18;20(1):259
pubmed: 36397071
BMC Evol Biol. 2014 Oct 14;14:210
pubmed: 25311226
Plant J. 2020 Jan;101(2):484-500
pubmed: 31559657
Biol Rev Camb Philos Soc. 2016 Aug;91(3):796-812
pubmed: 25969869
Comp Cytogenet. 2018 Sep 10;12(3):387-402
pubmed: 30338046
Genes Cells. 2021 Dec;26(12):979-986
pubmed: 34570411
Mol Biol Evol. 2021 Aug 23;38(9):3972-3992
pubmed: 33983366
Genes (Basel). 2023 Jan 31;14(2):
pubmed: 36833298
Nat Rev Mol Cell Biol. 2016 Jan;17(1):16-29
pubmed: 26601620
Exp Cell Res. 2020 May 15;390(2):111959
pubmed: 32173469
Genomics. 2020 Sep;112(5):3097-3107
pubmed: 32470643
BMC Evol Biol. 2015 Nov 14;15:251
pubmed: 26573692
Mol Ecol. 2023 Mar;32(6):1288-1305
pubmed: 35488497
Evolution. 2012 Oct;66(10):3198-208
pubmed: 23025609
Genes (Basel). 2023 Mar 17;14(3):
pubmed: 36981013
Front Genet. 2022 Jun 21;13:884072
pubmed: 35801083
Comp Cytogenet. 2016 Sep 16;10(3):439-445
pubmed: 27830051
Cytogenet Genome Res. 2010;129(4):314-22
pubmed: 20606399
PLoS One. 2017 Jul 19;12(7):e0181635
pubmed: 28723933
Genome Biol Evol. 2014 Dec 19;7(1):228-39
pubmed: 25527837
Curr Biol. 2014 Oct 6;24(19):2295-300
pubmed: 25242031
Chromosoma. 2022 Jun;131(1-2):29-45
pubmed: 35099570
Curr Opin Cell Biol. 2018 Jun;52:58-65
pubmed: 29454259
Sci Rep. 2017 Oct 10;7(1):12726
pubmed: 29018237
J Cell Biol. 1989 Nov;109(5):1963-73
pubmed: 2808515
Chromosome Res. 2016 Dec;24(4):437-450
pubmed: 27553478
Genome. 2002 Feb;45(1):165-74
pubmed: 11908659
Genes (Basel). 2022 Dec 28;14(1):
pubmed: 36672835
Elife. 2020 Sep 01;9:
pubmed: 32869739
Int J Mol Sci. 2021 Apr 21;22(9):
pubmed: 33919233
Semin Cell Dev Biol. 2022 Aug;128:51-60
pubmed: 35346579
Cells. 2021 Jun 17;10(6):
pubmed: 34204462
Mamm Genome. 2001 May;12(5):331-9
pubmed: 11331939
Heredity (Edinb). 2017 Mar;118(3):276-283
pubmed: 28000659
Sci Rep. 2018 Apr 11;8(1):5838
pubmed: 29643436
Cell. 2019 Jul 11;178(2):385-399.e20
pubmed: 31257025
Science. 2001 Aug 10;293(5532):1098-102
pubmed: 11498581
Cell. 2015 Dec 3;163(6):1527-38
pubmed: 26638077
Chromosome Res. 2014 Apr;22(1):35-44
pubmed: 24590843
Exp Cell Res. 2020 Apr 15;389(2):111895
pubmed: 32035948
Genes (Basel). 2019 Mar 16;10(3):
pubmed: 30884847
Genome Biol Evol. 2022 May 3;14(5):
pubmed: 35511582
Nucleic Acids Res. 2022 Jul 5;50(W1):W345-W351
pubmed: 35446428
Chromosome Res. 2015 Dec;23(4):767-79
pubmed: 26424612
Nat Protoc. 2020 Nov;15(11):3745-3776
pubmed: 33097925
Mol Ecol. 2022 Dec;31(23):5979-5992
pubmed: 34826177
Biol Lett. 2016 Mar;12(3):20150817
pubmed: 27029836
Cytogenet Cell Genet. 1992;60(3-4):229-35
pubmed: 1380417
Nat Commun. 2017 Nov 28;8(1):1833
pubmed: 29184138
Mol Genet Genomics. 2020 Jan;295(1):195-207
pubmed: 31624915
Mar Genomics. 2014 Jun;15:29-34
pubmed: 24844732
Genome Biol Evol. 2019 Nov 1;11(11):3291-3308
pubmed: 31687752
Genome Biol Evol. 2020 Mar 1;12(3):88-102
pubmed: 32211863