ARES-Kcr: A New Network Model Utilizing Attention Mechanism and Residual Structure for the Prediction of Lysine Crotonylation Sites.

PTMs prediction convolutional neural networks protein lysine crotonylation sequence analysis

Journal

Studies in health technology and informatics
ISSN: 1879-8365
Titre abrégé: Stud Health Technol Inform
Pays: Netherlands
ID NLM: 9214582

Informations de publication

Date de publication:
23 Nov 2023
Historique:
medline: 28 11 2023
pubmed: 26 11 2023
entrez: 26 11 2023
Statut: ppublish

Résumé

Lysine crotonylation (Kcr), as a significant post-translational modification of protein, exists in the core histones and some non histones of many organisms, and plays a crucial regulatory role in many biological processes such as gene expression, cell development, and disease treatment. Due to the high cost, time-consuming and labor-intensive nature of traditional biological experimental methods, it is necessary to develop efficient, low-cost and accurate calculation methods for identifying crotonylation sites. Therefore, we propose a new network model called ARES-Kcr, which extracts three types of features from different perspectives and integrates convolutional modules, attention mechanisms, and residual modules for feature fusion to improve prediction ability in this paper. Our model performs significantly better than other models on the benchmark dataset, with an average AUC of 92% in the independent test set, demonstrating its excellent predictive ability.

Identifiants

pubmed: 38007777
pii: SHTI230877
doi: 10.3233/SHTI230877
doi:

Substances chimiques

Lysine K3Z4F929H6
Histones 0

Types de publication

Journal Article

Langues

eng

Pagination

505-512

Auteurs

Ling Tong (L)

School of Electrical Engineering and Automation, Anhui University, Hefei, China.

Shuanghao Yong (S)

School of Electrical Engineering and Automation, Anhui University, Hefei, China.

Wei Li (W)

School of Electrical Engineering and Automation, Anhui University, Hefei, China.

Xiao Yang (X)

School of Electrical Engineering and Automation, Anhui University, Hefei, China.

Xing Wang (X)

School of Electrical Engineering and Automation, Anhui University, Hefei, China.

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Classifications MeSH